Gm31003 (predicted gene, 31003) - Rat Genome Database

Name: Gm31003
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

Gene: Gm31003 (predicted gene, 31003) Mus musculus

Analyze

Symbol:

Gm31003

Name:

predicted gene, 31003

RGD ID:

9638102

MGI Page

MGI

Description:

Type:

ncrna

RefSeq Status:

MODEL

Latest Assembly:

GRCm39 - Mouse Genome Assembly GRCm39

Position:

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	14	115,101,364 - 115,105,151 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm38	14	114,864,000 - 114,867,715 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
Celera	14	113,454,393 - 113,458,108 (+)	NCBI		Celera
Cytogenetic Map	14	E4	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

References

Genomics

Variants

Variants in Gm31003
164 total Variants

QTLs in Region (GRCm39)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1357589	Kdnw2_m	kidney weight 2 (mouse)			Not determined		14	20887473	121269804	Mouse
4142508	Tgq25_m	triglyceride QTL 25 (mouse)			Not determined			85134068	119134068	Mouse
12792981	Fbmd5_m	femoral bone mineral density 5, females only (mouse)					14	99838217	125033054	Mouse
12798541	Scvg3_m	subcutaneous vessel growth QTL 3 (mouse)					14	105544636	117275989	Mouse
10755523	Hgb2_m	hemoglobin 2 (mouse)					14	105884654	125139656	Mouse
12903991	Opfaq4_m	open field activity QTL 4 (mouse)					14	111211209	118699845	Mouse

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	XR_003951094	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_383742	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_874954	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_874955	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC131747	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

XR_003951094

Type:

NON-CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	14	115,102,686 - 115,103,748 (+)	NCBI
GRCm38	14	114,865,254 - 114,866,316 (+)	NCBI

Sequence:

show sequence

AGCTATTAACAGAGCAGCGGTGCCAGTGGAAGAGACTTCTGTTGAGTGGGTGCTTCTGCCTTCC
TTGTTCTACAGGGTGGCTGGCTGCAGGGGAATTGTGATGGCATGAGGCCCCCCAAGAATTGCTG
GGACCCTGTTAGGAGACGTTGTGCATACCATTCCTGTTTGTGTGTCCGTCCTCTCCAGAACCAA
CAGCGAACTTGGACCGAGGCATTAGGAACCGTGCAGCTCGAAGACCCAGCTTGCTCCCTCCGCA
AATTCACAAGAAGTTTGAGAATCCACTGCCCAAACATACGCACACAATCTTATTTCAGGAGGAG
TCTGCCTTTGTAAGCTGGAGTTTTTTTTTTTTTTCTTCAAACAGAACTTTTAAAAGACCTACTG
ACATGGTCAGAAGCCAAAACAGAGACTTGGACTGCTGGATAAAACCCAAGGGGCCACTCAGGCT
CTTGTTTCCCAATGGAAGCACATTGGTCTCACAAAGGTTAAGTGACTTCAGTTACTGAATAGCG
AAGTGTGGATGAGACCCTAGGGGCACACTGCGAGGTAGCCCCCGCCCACGAACTCATCCCACTC
CCACGCAGATCCTCTCCAGGAGCTCCACCAGAAAATTCATTGACTTTTTTATGAGGACCCGTGG
GAGGAAGAAATGTTTCTCAAGGCTAAGTAGCGAGAATAACTATGCTTCTTTGGGACTGTTCTCC
ATTTTGTTCGTGGACTCTTGGAACGTGTAATGGCTGGCTTCCCACTGATGGTGCCAGCCAGGAA
ACTCAAGACTCTGGCAGTGAGCAGGTAGGCATCGTGAGAGTCACAGCTTTTACATGCCTACCCT
TGTGACTTCGCTCTCCAGGATTTTCTCTTTTGCTTTGATTTTCTCAAAAA

hide sequence

RefSeq Acc Id:

XR_383742

Type:

NON-CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	14	115,101,364 - 115,103,748 (+)	NCBI
GRCm38	14	114,864,000 - 114,866,316 (+)	NCBI

Sequence:

show sequence

CTCGTCTCTAATCCTCTAGATGACAGTAACATCAAACATCATTGTCAGGTGATAACAACCAAAT
GTATGGAGACGTTGCTAGTGCCTCCCAATGGAGAACCACTAAGGTAGAGGGTGGCTGGCTGCAG
GGGAATTGTGATGGCATGAGGCCCCCCAAGAATTGCTGGGACCCTGTTAGGAGACGTTGTGCAT
ACCATTCCTGTTTGTGTGTCCGTCCTCTCCAGAACCAACAGCGAACTTGGACCGAGGCATTAGG
AACCGTGCAGCTCGAAGACCCAGCTTGCTCCCTCCGCAAAACTTTTAAAAGACCTACTGACATG
GTCAGAAGCCAAAACAGAGACTTGGACTGCTGGATAAAACCCAAGGGGCCACTCAGGCTCTTGT
TTCCCAATGGAAGCACATTGGTCTCACAAAGGTTAAGTGACTTCAGTTACTGAATAGCGAAGTG
TGGATGAGACCCTAGGGGCACACTGCGAGGTAGCCCCCGCCCACGAACTCATCCCACTCCCACG
CAGATCCTCTCCAGGAGCTCCACCAGAAAATTCATTGACTTTTTTATGAGGACCCGTGGGAGGA
AGAAATGTTTCTCAAGGCTAAGTAGCGAGAATAACTATGCTTCTTTGGGACTGTTCTCCATTTT
GTTCGTGGACTCTTGGAACGTGTAATGGCTGGCTTCCCACTGATGGTGCCAGCCAGGAAACTCA
AGACTCTGGCAGTGAGCAGGTAGGCATCGTGAGAGTCACAGCTTTTACATGCCTACCCTTGTGA
CTTCGCTCTCCAGGATTTTCTCTTTTGCTTTGATTTTCTCAAAAA

hide sequence

RefSeq Acc Id:

XR_874954

Type:

NON-CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	14	115,102,699 - 115,103,748 (+)	NCBI
GRCm38	14	114,865,267 - 114,866,316 (+)	NCBI

Sequence:

show sequence

GCAGCGGTGCCAGTGGAAGAGACTTCTGTTGAGTGGGTGCTTCTGCCTTCCTTGTTCTACAGGG
TGGCTGGCTGCAGGGGAATTGTGATGGCATGAGGCCCCCCAAGAATTGCTGGGACCCTGTTAGG
AGACGTTGTGCATACCATTCCTGTTTGTGTGTCCGTCCTCTCCAGAACCAACAGCGAACTTGGA
CCGAGGCATTAGGAACCGTGCAGCTCGAAGACCCAGCTTGCTCCCTCCGCAAAACTTTTAAAAG
ACCTACTGACATGGTCAGAAGCCAAAACAGAGACTTGGACTGCTGGATAAAACCCAAGGGGCCA
CTCAGGCTCTTGTTTCCCAATGGAAGCACATTGGTCTCACAAAGGTTAAGTGACTTCAGTTACT
GAATAGCGAAGTGTGGATGAGACCCTAGGGGCACACTGCGAGGTAGCCCCCGCCCACGAACTCA
TCCCACTCCCACGCAGATCCTCTCCAGGAGCTCCACCAGAAAATTCATTGACTTTTTTATGAGG
ACCCGTGGGAGGAAGAAATGTTTCTCAAGGCTAAGTAGCGAGAATAACTATGCTTCTTTGGGAC
TGTTCTCCATTTTGTTCGTGGACTCTTGGAACGTGTAATGGCTGGCTTCCCACTGATGGTGCCA
GCCAGGAAACTCAAGACTCTGGCAGTGAGCAGGTAGGCATCGTGAGAGTCACAGCTTTTACATG
CCTACCCTTGTGACTTCGCTCTCCAGGATTTTCTCTTTTGCTTTGATTTTCTCAAAAA

hide sequence

RefSeq Acc Id:

XR_874955

Type:

NON-CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	14	115,102,699 - 115,105,151 (+)	NCBI
GRCm38	14	114,865,267 - 114,867,715 (+)	NCBI

Sequence:

show sequence

GCAGCGGTGCCAGTGGAAGAGACTTCTGTTGAGTGGGTGCTTCTGCCTTCCTTGTTCTACAGGG
TGGCTGGCTGCAGGGGAATTGTGATGGCATGAGGCCCCCCAAGAATTGCTGGGACCCTGTTAGG
AGACGTTGTGCATACCATTCCTGTTTGTGTGTCCGTCCTCTCCAGAACCAACAGCGAACTTGGA
CCGAGGCATTAGGAACCGTGCAGCTCGAAGACCCAGCTTGCTCCCTCCGCAAAACTTTTAAAAG
ACCTACTGACATGGTCAGAAGCCAAAACAGAGACTTGGACTGCTGGATAAAACCCAAGGGGCCA
CTCAGGCTCTTGTTTCCCAATGGAAGCACATTGGTCTCACAAAGGTTAAGTGACTTCAGTTACT
GAATAGCGAAGTGTGGATGAGACCCTAGGGGCACACTGCGAGGTAGCCCCCGCCCACGAACTCA
TCCCACTCCCACGCAGATCCTCTCCAGGAGCTCCACCAGAAAATTCATTGACTTTTTTATGAGG
ACCCGTGGGAGGAAGAAATGTTTCTCAAGGCTAAGTAGCGAGAATAACTATGCTTCTTTGGGAC
TGTTCTCCATTTTGTTCGTGGACTCTTGGAACGTGTAATGGCTGGCTTCCCACTGATGGTGCCA
GCCAGGAAACTCAAGACTCTGGCAGTGAGCAGGATAATGAGTCTGAAATGTAACCGCACCTGGA
TTGCCTCATGTTCCTGTACACCCACAGCCAGATTTGGGTGGTCATGATTTCATCATTTATCATG
GACACTGACTCATTCCATGCTGGGGCAAACTAAATATTTACTGAATAAATCTTCCAAGCTGCTA
CCAGAAAATGGGATGTGTTGGAAGCAAAGAAGCTGTCACAGAAAACAGAGTAACTGCAGCTGAG
GAAGAAACTGGAATCCGTTTCTCTGCACCAAAGCTGACGGCAAAGCCTTCTGGCATCCTCTGGT
TTTGAAGAAACAACTCTAAACTGTGGGGTTTTTTTTTTATTGTTGTTGTTTGTTTGTTTGTTTG
TTTGTTTTTTGTTTTTGTTGTTCTGTTCTATCTTCTTTTTACTTCAAGGTGGTGGGGGAGCCAG
ATGTTACTCTCAACACATCGTTAAATAGCCATCCTTTCCCTTGAGTACCTACCTGAGGTTTGCC
AGTATTCTTACAAATACCAGCTAATCTTGGCTCTGACCCTAGAAAGCATCCAATGACGGTCAAG
AAAATGGACCTGCCCACCTATCCACCCACCAATCCAGTGGATGGGAACACTGGAACCTGTACAA
CAAAGACAAGTAGGGAAGAAACTGAAACGAAACTCCAAGGCGCTAAAGCATCCTACAACTAGGT
TGTGAAAAGACACACTATTCCTTCCACCCCTGGTTTAACCCGGGGATGGTTCACAGACAAGCAG
TCACGGCGCTTTTATACATCACAGATTCCGTTTATTTCAGAAAATGTGAGGTCAATTTTTTTCT
GTCTGACTCTATTGGCTATTCCCTTTCATGCCTTCAGATGTACTCCGGTGCTGATTTCTATCAT
CAAGTTCTTTGATCTTCAACGGTAAAGTCTACTTCCTTTAGGGCCGTTGGAATAACTGTGCATC
AGAAACAATGACAGCCGGGGCTATAGCTGTGGACATACTGAGCTTCTCTAGTCAATACTGCTAA
CAGAGGTAAAAATAAAGGAATTGTGAAAGACACATTTAAAATATCCTACCGAAATGGAGGAGCT
AGAGAAAGTACCCAAGGAGCTAAAGGGATCTGCAACCCTATAGGTGGATCAACATTATGAACT

hide sequence

Additional Information

External Database Links

Database	Acc Id	Source(s)
MGD	MGI:5590162	ENTREZGENE
NCBI Gene	Gm31003	ENTREZGENE
PhenoGen	Gm31003	PhenoGen

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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