Gm33474 (predicted gene, 33474) - Rat Genome Database

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Gene: Gm33474 (predicted gene, 33474) Mus musculus
Analyze
Symbol: Gm33474
Name: predicted gene, 33474
RGD ID: 9633861
MGI Page MGI
Description:
Type: ncrna (Ensembl: lncRNA)
RefSeq Status: MODEL
Previously known as: Gm43419
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm395107,196,356 - 107,228,453 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl5107,196,702 - 107,224,003 (+)EnsemblGRCm39 Ensembl
GRCm385107,048,577 - 107,078,811 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl5107,048,836 - 107,056,042 (+)EnsemblGRCm38mm10GRCm38
Celera5104,160,889 - 104,191,144 (+)NCBICelera
Cytogenetic Map5E5NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12466851   PMID:16141072   PMID:16141073  


Genomics

Variants

.
Variants in Gm33474
1097 total Variants

QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
11341716Rvfs3_mRift Valley fever susceptibility 3 (mouse)526441234138455402Mouse
1301524Lmb2_mlupus in MRL and B6 F2 cross (mouse)Not determined537581488112465722Mouse
11041665Lmr24_mleishmaniasis resistance 24 (mouse)552694462107321041Mouse
11041899Lmr24a_mleishmaniasis resistance 24a (mouse)552694462107321041Mouse
4142064Tmc1m4_mTmc1 modifier 4 (mouse)Not determined554500177127001072Mouse
4142317Rgcs1_mretinal ganglion cell susceptible 1 (mouse)Not determined55388334108762627Mouse
26884395Humsd2_mhumerus midshaft diameter 2, 10 week (mouse)570057343132528839Mouse
27226719Tibw6_mtibia width 6, proximal, 16 week (mouse)572857343139985755Mouse
25314315Mlh1fc4_mMLH1 foci count 4 (mouse)574460661132528839Mouse
13506928Recrq8_mrecombination rate in male meiosis QTL 8 (mouse)574460661132528839Mouse
1357431Cia27_mcollagen induced arthritis 27 (mouse)Not determined575315348120018629Mouse
4141438Skmw13_mskeletal muscle weight 13 (mouse)Not determined576190263110190479Mouse
4141505Chlq14_mcirculating hormone level QTL 14 (mouse)Not determined576280786110280917Mouse
1300986Hdlq2_mHDL QTL 2 (mouse)Not determined576280786110280917Mouse
1301691Cdcs10_mcytokine deficiency colitis susceptibility 10 (mouse)Not determined576280786110280917Mouse
1301829Thyls2_mthymic lymphoma susceptibility 2 (mouse)Not determined576445064110445225Mouse
1301713Dbsty2_mdiabesity 2 (mouse)Not determined576445064110445225Mouse
13464249Ahl16_mage related hearing loss, early onset 16 (mouse)576445064110445225Mouse
1300931Cocrb6_mcocaine related behavior 6 (mouse)Not determined576445064110445225Mouse
10401246Bglu13_mblood glucose level 13 (mouse)Not determined579539640113539786Mouse
10755524Mono1_mmonocyte differential 1 (mouse)580849259114849259Mouse
1301419Cypr3_mcytokine production 3 (mouse)Not determined581019649115019803Mouse
10401245Bglu18_mblood glucose level 18 (mouse)Not determined582838468116838597Mouse
13464242Ahl17_mage related hearing loss, early onset 17 (mouse)582838468116838597Mouse
10043958Chldq12_mcholesterol and HDL QTL 12 (mouse)Not determined587386871121387065Mouse
1301126Bwem1_mbody weight day 30 males 1 (mouse)Not determined587386871121387065Mouse
13464241Ahl18_mage related hearing loss, early onset 18 (mouse)587386871121387065Mouse
1300801Drb2_mdopamine receptor binding 2 (mouse)Not determined587386871121387065Mouse
1301399Cpfd3_mcerebellum pattern fissures (mouse)Not determined587386871121387065Mouse
1357725Eae39_mexperimental allergic encephalomyelitis 39 (mouse)Not determined589418876118864028Mouse
1300968Skts4_mskin tumor susceptibility 4 (mouse)Not determined589418876124238239Mouse
1301362Prnr1_mprion resistance 1 (mouse)Not determined589418876146787935Mouse
11049562Lmr24f_mleishmaniasis resistance 24f (mouse)590320962124321041Mouse
1301457Cfsw2_mcystic fibrosis survival to weaning 2 (mouse)Not determined590561006124561151Mouse
1300993Hycdc_mhypercapnic duty cycle (mouse)Not determined590561006124561151Mouse
9587780Afw16_mabdominal fat weight QTL 16 (mouse)Not determined592830166126830285Mouse
1301974Chab7_mcholesterol absorption 7 (mouse)Not determined595233214129233330Mouse
1357644Egrd1_mearly growth rate, direct effect 1 (mouse)Not determined595434580129434786Mouse
10402486Dipa1_mdrug induced psychomotor activation 1 (mouse)Not determined595465549129465722Mouse
13464244Ahl19_mage related hearing loss, early onset 19 (mouse)595465549129465722Mouse
1558774Lith17_mlithogenic gene 17 (mouse)Not determined595465549129465722Mouse
1300940Actd3_mactivity-distance traveled 3 (mouse)Not determined596320385130320533Mouse
1300659Pcd8ts1_mp-glycoprotein positive CD8 T cell subset 1 (mouse)Not determined597021753131021986Mouse
1301858Smdq1_msegregation of mitochondrial DNA QTL 1 (mouse)Not determined597021753131021986Mouse
10045978Tir10_mtrypanosome infection response 10 (mouse)Not determined598019649114021986Mouse
1301042Elmaz1_melevated maze behavior 1 (mouse)Not determined598019649116876624Mouse
1301877Bbaa3_mB.burgdorferi-associated arthritis 3 (mouse)Not determined599455285112465722Mouse
4141519Hmtb5_mhemostasis and thrombosis bleeding time 5 (mouse)Not determined99949422126882944Mouse
12904945Tammq2_mtibialis anterior muscle mass QTL 2 (mouse)5100665965134665965Mouse
12904959Smmq1_msoleus muscle mass QTL 1 (mouse)5100665965134665965Mouse
12859290Criq2_mCitrobacter rodentium infection QTL 2 (mouse)5101332579135332579Mouse
1301624Aevm2_mautoimmune extremity vasculitis in MRL mice 2 (mouse)Not determined5101863832135864028Mouse
14746986Manh58_mmandible shape 58 (mouse)5102446283136446283Mouse
11532736Sluc33b_msusceptibility to lung cancer 33b (mouse)5102945037136945196Mouse
25314310Syncl4_msynaptonemal complex length 4 (mouse)5103047866115538059Mouse
25314317Sccor3_msynaptonemal complex length to mean MLH1 count ratio 3 (mouse)5104347866114738061Mouse
11528550Sluc33_msusceptibility to lung cancer 33 (mouse)5104386871120711986Mouse
1357886Diht_mdopamine-induced hypothermia (mouse)Not determined5104498738115101540Mouse
10412202Bbaa26_mB.burgdorferi-associated arthritis 26 (mouse)Not determined5104583688138555455Mouse
10412239Alpq7_malcohol preference QTL 7 (mouse)Not determined5104705939138705939Mouse


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000199486
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl5107,196,702 - 107,203,908 (+)Ensembl
GRCm38.p6 Ensembl5107,048,836 - 107,056,042 (+)Ensembl
RefSeq Acc Id: ENSMUST00000242071
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl5107,203,006 - 107,212,125 (+)Ensembl
RefSeq Acc Id: ENSMUST00000243509
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl5107,203,049 - 107,224,003 (+)Ensembl
RefSeq Acc Id: ENSMUST00000243920
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl5107,203,009 - 107,204,850 (+)Ensembl
RefSeq Acc Id: XR_004942760
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm395107,202,436 - 107,228,453 (+)NCBI
Sequence:
RefSeq Acc Id: XR_004942761
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm395107,202,436 - 107,228,453 (+)NCBI
Sequence:
RefSeq Acc Id: XR_004942762
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm395107,202,436 - 107,226,605 (+)NCBI
Sequence:
RefSeq Acc Id: XR_004942763
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm395107,202,436 - 107,226,605 (+)NCBI
Sequence:
RefSeq Acc Id: XR_004942764
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm395107,196,356 - 107,228,453 (+)NCBI
Sequence:
RefSeq Acc Id: XR_004942765
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm395107,202,436 - 107,228,453 (+)NCBI
Sequence:
RefSeq Acc Id: XR_389487
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm395107,202,436 - 107,207,852 (+)NCBI
GRCm385107,048,591 - 107,059,986 (+)NCBI
Sequence:
RefSeq Acc Id: XR_880520
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm395107,202,436 - 107,211,935 (+)NCBI
GRCm385107,048,591 - 107,064,062 (+)NCBI
Sequence:
Promoters
RGD ID:15092906
Promoter ID:EPDNEWNC_M825
Type:single initiation site
Name:Gm33474_1
Description:predicted gene, 33474 [Source:MGI Symbol;Acc:MGI:5592633]
SO ACC ID:SO:0000170
Source:EPDNEWNC (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm385107,048,804 - 107,048,864EPDNEWNC

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000106554 Ensembl
MGD MGI:5592633 ENTREZGENE
NCBI Gene Gm33474 ENTREZGENE
PhenoGen Gm33474 PhenoGen