Gm30003 (predicted gene, 30003) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Gene: Gm30003 (predicted gene, 30003) Mus musculus
Analyze
Symbol: Gm30003
Name: predicted gene, 30003
RGD ID: 9627502
MGI Page MGI
Description:
Type: ncrna (Ensembl: lncRNA)
RefSeq Status: MODEL
Previously known as: Gm43278
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm395134,774,304 - 134,851,822 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl5134,775,896 - 134,851,821 (+)EnsemblGRCm39 Ensembl
GRCm385134,745,712 - 134,822,968 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl5134,747,042 - 134,822,967 (+)EnsemblGRCm38mm10GRCm38
Celera5131,755,251 - 131,832,767 (+)NCBICelera
Cytogenetic Map5G2NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12466851   PMID:14610273   PMID:16141072   PMID:16141073  


Genomics

Variants

.
Variants in Gm30003
2619 total Variants

QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
11341716Rvfs3_mRift Valley fever susceptibility 3 (mouse)526441234138455402Mouse
27226719Tibw6_mtibia width 6, proximal, 16 week (mouse)572857343139985755Mouse
1301362Prnr1_mprion resistance 1 (mouse)Not determined589418876146787935Mouse
12859290Criq2_mCitrobacter rodentium infection QTL 2 (mouse)5101332579135332579Mouse
1301624Aevm2_mautoimmune extremity vasculitis in MRL mice 2 (mouse)Not determined5101863832135864028Mouse
14746986Manh58_mmandible shape 58 (mouse)5102446283136446283Mouse
11532736Sluc33b_msusceptibility to lung cancer 33b (mouse)5102945037136945196Mouse
10412202Bbaa26_mB.burgdorferi-associated arthritis 26 (mouse)Not determined5104583688138555455Mouse
10412239Alpq7_malcohol preference QTL 7 (mouse)Not determined5104705939138705939Mouse
10043890Trigq4_mtriglyceride QTL 4 (mouse)Not determined5107906299141906412Mouse
4142473Chlq11_mcirculating hormone level QTL 11 (mouse)Not determined5107906299141906412Mouse
13464243Ahl20_mage related hearing loss, early onset 20 (mouse)5107906299141906412Mouse
10412197Bbaa25_mB.burgdorferi-associated arthritis 25 (mouse)Not determined5109167240143167381Mouse
13464251Ahl21_mage related hearing loss, early onset 21 (mouse)5109167240143167381Mouse
1301543Hypch_mhypercholesterolemia (mouse)Not determined5109238624139118905Mouse
1300913Bwefm_mbody weight females and males day 10 (mouse)Not determined5109439348143439459Mouse
1301102Cia14_mcollagen induced arthritis 14 (mouse)Not determined5113320385138555455Mouse
1301226Bbaa2_mB.burgdorferi-associated arthritis 2 (mouse)Not determined5115156883149157015Mouse
1300827Cora1_mcorrelation in cytokine production 1 (mouse)Not determined5115156883149157015Mouse
1301857Bglq14_mbody growth late QTL 14 (mouse)Not determined5118948964151758149Mouse
10412191Bbaa24_mB.burgdorferi-associated arthritis 24 (mouse)Not determined5119945037141700466Mouse
4141081Nidd7k_mNidd7 on KK-A (mouse)Not determined119945037149347326Mouse
11528552Scram1_mspinal cord resistance to astrocytoma modifier 1 (mouse)5121455402151758149Mouse
1301986Bpq4_mblood pressure QTL 4 (mouse)Not determined5121555236151758149Mouse
1302079Lbw3_mlupus NZB x NZW 3 (mouse)Not determined5124700335151758149Mouse
1301363Pbwg13_mpostnatal body weight growth 13 (mouse)Not determined5125133457151758149Mouse
1301715Elmaz2_melevated maze behavior 2 (mouse)Not determined5125178229141700466Mouse
4141218Ath24_matherosclerosis 24 (mouse)Not determined129520084151758149Mouse
12880406Jcdq2_mjoint cartilage degeneration QTL 2 (mouse)5129787831151758149Mouse
13464143Bbaa2b_mB.burgdorferi-associated arthritis 2b (mouse)5133052969140709801Mouse
11049557Lmr26_mleishmaniasis resistance 26 (mouse)5133925558151758149Mouse


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000200700
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl5134,775,896 - 134,851,821 (+)Ensembl
GRCm38.p6 Ensembl5134,747,042 - 134,822,967 (+)Ensembl
RefSeq Acc Id: XR_003955804
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm395134,774,304 - 134,851,822 (+)NCBI
GRCm385134,745,712 - 134,822,968 (+)NCBI
Sequence:
RefSeq Acc Id: XR_003955805
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm395134,774,304 - 134,830,354 (+)NCBI
GRCm385134,745,712 - 134,801,500 (+)NCBI
Sequence:
RefSeq Acc Id: XR_377128
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm395134,776,079 - 134,830,354 (+)NCBI
GRCm385134,747,225 - 134,801,500 (+)NCBI
Sequence:
RefSeq Acc Id: XR_868582
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm395134,774,304 - 134,830,354 (+)NCBI
GRCm385134,745,712 - 134,801,500 (+)NCBI
Sequence:
RefSeq Acc Id: XR_868583
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm395134,774,304 - 134,830,978 (+)NCBI
GRCm385134,745,712 - 134,802,124 (+)NCBI
Sequence:
RefSeq Acc Id: XR_868585
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm395134,774,304 - 134,851,822 (+)NCBI
GRCm385134,745,712 - 134,822,968 (+)NCBI
Sequence:
RefSeq Acc Id: XR_868586
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm395134,774,304 - 134,830,071 (+)NCBI
GRCm385134,745,712 - 134,801,217 (+)NCBI
Sequence:
RefSeq Acc Id: XR_868587
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm395134,774,304 - 134,851,822 (+)NCBI
GRCm385134,745,712 - 134,822,968 (+)NCBI
Sequence:

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000107318 Ensembl
MGD MGI:5589162 ENTREZGENE
NCBI Gene Gm30003 ENTREZGENE
PhenoGen Gm30003 PhenoGen