Mir8096 (microRNA 8096) - Rat Genome Database

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Gene: Mir8096 (microRNA 8096) Mus musculus
Analyze
Symbol: Mir8096
Name: microRNA 8096
RGD ID: 9621870
MGI Page MGI
Description: microRNAs (miRNAs) are short (20-24 nt) non-coding RNAs that are involved in post-transcriptional regulation of gene expression in multicellular organisms by affecting both the stability and translation of mRNAs. miRNAs are transcribed by RNA polymerase II as part of capped and polyadenylated primary transcripts (pri-miRNAs) that can be either protein-coding or non-coding. The primary transcript is cleaved by the Drosha ribonuclease III enzyme to produce an approximately 70-nt stem-loop precursor miRNA (pre-miRNA), which is further cleaved by the cytoplasmic Dicer ribonuclease to generate the mature miRNA and antisense miRNA star (miRNA*) products. The mature miRNA is incorporated into a RNA-induced silencing complex (RISC), which recognizes target mRNAs through imperfect base pairing with the miRNA and most commonly results in translational inhibition or destabilization of the target mRNA. The RefSeq represents the predicted microRNA stem-loop. [provided by RefSeq, Sep 2009]
Type: ncrna (Ensembl: miRNA)
RefSeq Status: PROVISIONAL
Previously known as: Gm27479; mmu-mir-8096
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39185,679,669 - 85,679,795 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl185,679,669 - 85,679,795 (+)EnsemblGRCm39 Ensembl
GRCm38185,751,948 - 85,752,074 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl185,751,948 - 85,752,074 (+)EnsemblGRCm38mm10GRCm38
Celera188,716,784 - 88,716,910 (+)NCBICelera
Cytogenetic Map1C5NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
glyphosate  (EXP)

References
Additional References at PubMed
PMID:16381832   PMID:23185045  


Genomics

Variants

.
Variants in Mir8096
2 total Variants
miRNA Target Status

Predicted Targets
Summary Value
Count of predictions:7096
Count of gene targets:4786
Count of transcripts:6813
Interacting mature miRNAs:mmu-miR-8096
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1357488Splq3_mspleen weight QTL 3 (mouse)Not determined134760138150193871Mouse
1301162Skull1_mskull morphology 1 (mouse)Not determined15799197791992080Mouse
1558717Ses1a_msalmonella enteritidis susceptibility 1a (mouse)Not determined15672692290727077Mouse
1357505Vtbt1_mvertebral trabecular bone trait 1 (mouse)Not determined15626621490266360Mouse
1300746Skl1_mskeletal size (tail length) 1 (mouse)Not determined15799197791992080Mouse
13452395Leusq2_mleucocytosis susceptibility QTL 2 (mouse)180245593126386517Mouse
1558860W10q7_mweight 10 weeks QTL 7 (mouse)Not determined134760138150193871Mouse
1300989Lrdg1_mlight induced retinal degeneration 1 (mouse)Not determined173755175147125370Mouse
25394563Skmw48_mskeletal muscle weight 48, EDL (mouse)18547800687323158Mouse
1301667Lxw5_mlupus BXSB x NZW 5 (mouse)Not determined15854919192549443Mouse
1300976Bmd19_mbone mineral density 19 (mouse)Not determined173266214108838414Mouse
1357847Jckm2_mjuvenile cystic kidney modifier 2 (mouse)Not determined174991977133290937Mouse
27095931Pglq1_mpelvic girdle length QTL 1, 5 week (mouse)175976637128527737Mouse
27095928Pglq6_mpelvic girdle length QTL 6, 10 week (mouse)175976637148775742Mouse
12050069Nabq1_mnasal bone morphology QTL 1 (mouse)179858683113858791Mouse
1301304Hrq3_mheart rate quantitative locus 3 (mouse)Not determined173615692107615830Mouse
1357721Sle17_msystematic lupus erythematosus susceptibility 17 (mouse)Not determined139132808126445310Mouse
1301933Insq6_minsulin QTL 6 (mouse)Not determined15672692290727077Mouse
14696693Avd2q1_mattack value day 2 QTL 1 (mouse)17897771790927722Mouse
1301748Abbp1_mA/J and C57BL/6 blood pressure 1 (mouse)Not determined162946755120529678Mouse
1302146Cocrb1_mcocaine related behavior 1 (mouse)Not determined170133533104139557Mouse
26884448Sklq1_mskull length QTL 1, 5 week (mouse)175976637181327565Mouse
12791004Aath7_maortic arch atherosclerosis 7 (mouse)182832635116832635Mouse
1357741Nidd5k_mNidd5 on KK-A<y> (mouse)Not determined15597494889975057Mouse
27095918Ulnl1_mulna length 1, 5 week (mouse)167339159129727737Mouse
1357439Popoa_mpremature ovulation and primary oocyte arrest (mouse)Not determined182643189135615379Mouse
13824984Twq5_mtestis weight QTL 5 (mouse)13069992184732197Mouse
14747009Manh49_mmandible shape 49 (mouse)15794135191941351Mouse
10412185Hcs9_mhepatocarcinogenesis susceptibility 9 (mouse)Not determined163854690189303617Mouse
4141625Emo4_memotionality 4 (mouse)Not determined6807134586235027Mouse
4141914Gcsfis_mG-CSF induced splenomegaly (mouse)Not determined74516235148715579Mouse
10412238Alpq5_malcohol preference QTL 5 (mouse)Not determined182832635116832635Mouse
1301722Cia9_mcollagen induced arthritis QTL 9 (mouse)Not determined145783900189303617Mouse
1301444Alcw5_malcohol withdrawal 5 (mouse)Not determined15854919192549443Mouse
1302029Sst1_msusceptibility to tuberculosis 1 (mouse)Not determined18165211487130822Mouse
14746998Mancz1_mmandible centroid size 1 (mouse)15794135191941351Mouse
14696692Tavq1_mtotal attack value QTL 1 (mouse)18197771588427722Mouse
1357753Kidq2_mkidney weight QTL 2 (mouse)Not determined134760138150193871Mouse
1301350Nidd4k_mNidd4 on KK-A (mouse)Not determined782291982147125370Mouse
1300841Ssial1_msusceptibility to sialadenitis 1 (mouse)Not determined163920002153557562Mouse
11039528Ccc3_mcolitis susceptibility in the Collaborative Cross 3 (mouse)13680142195051546Mouse
4142291Aec2_mautoimmune exocrinopathy 2 (mouse)Not determined52457737182250592Mouse
4142467Wbcq1_mwhite blood cell quantitative locus 1 (mouse)Not determined15626621490266360Mouse
1558928Mord2_mmodifier of retinal degeneration 2 (mouse)Not determined177123115110536075Mouse
25394564Skmw49_mskeletal muscle weight 49, TA (mouse)18342011988552630Mouse
1357679Egrm1_mearly growth rate, maternal effect 1 (mouse)Not determined15799197791992080Mouse
1302119Cia15_mcollagen induced arthritis 15 (mouse)Not determined16588900688496101Mouse
4142394Mssq1_mmandible size and shape QTL 1 (mouse)Not determined73615692107615830Mouse
1300821Lore1_mloss of righting induced by ethanol 1 (mouse)Not determined17554919192941077Mouse
14697706Stsl3a_mSalmonella typhimurium susceptibility locus 3a (mouse)17747663795827725Mouse
14696691Malq1_mmean attack latency QTL 1 (mouse)17797663787927722Mouse
4141725Wbcq4_mwhite blood cell quantitative locus 4 (mouse)Not determined179858683113858791Mouse


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NR_106172 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC161342 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000184526
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl185,679,669 - 85,679,795 (+)Ensembl
GRCm38.p6 Ensembl185,751,948 - 85,752,074 (+)Ensembl
RefSeq Acc Id: NR_106172
RefSeq Status: PROVISIONAL
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39185,679,669 - 85,679,795 (+)NCBI
GRCm38185,751,948 - 85,752,074 (+)NCBI
Celera188,716,784 - 88,716,910 (+)NCBI
Sequence:

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000098634 Ensembl, ENTREZGENE
Ensembl Transcript ENSMUST00000184526 ENTREZGENE
MGD MGI:5530861 ENTREZGENE
miRBase MI0026024 ENTREZGENE
NCBI Gene Mir8096 ENTREZGENE
PhenoGen Mir8096 PhenoGen
RNAcentral URS0000759DB5 RNACentral
  URS000075EC2C RNACentral