Gm35454 (predicted gene, 35454) - Rat Genome Database

Name: Gm35454
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

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Gene: Gm35454 (predicted gene, 35454) Mus musculus

Analyze

Symbol:

Gm35454

Name:

predicted gene, 35454

RGD ID:

9621736

MGI Page

MGI

Description:

Type:

ncrna

RefSeq Status:

MODEL

Latest Assembly:

GRCm38 - Mouse Genome Assembly GRCm38

Position:

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	9	122,264,947 - 122,267,199 (-)	NCBI	GRCm39		mm39
GRCm38	9	122,435,882 - 122,438,134 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	9	122,435,818 - 122,438,165 (-)	Ensembl	GRCm38		mm10	GRCm38
Celera	9	122,893,604 - 122,895,845 (-)	NCBI		Celera
Cytogenetic Map	9	F4	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

References

Genomics

QTLs in Region (GRCm38)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
10412242	Alpq8_m	alcohol preference QTL 8 (mouse)			Not determined		9	89284925	123284925	Mouse
1301649	Psl1_m	promotion susceptibility QTL 1 (mouse)			Not determined		9	89412277	123412396	Mouse
18182932	Metl3_m	metabolite locus 3, N-acetylglutamate (mouse)					9	89563342	123563342	Mouse
12910770	Splic1_m	spleen iron content 1 (mouse)					9	91413879	124595110	Mouse
12910772	Lvic6_m	liver iron content 6 (mouse)					9	91413879	124595110	Mouse
12910773	Splic3_m	spleen iron content 3 (mouse)					9	91413879	124595110	Mouse
1558767	Skmw11_m	skeletal muscle weight 11 (mouse)			Not determined		9	91641084	124595110	Mouse
13463474	Hbbcq5_m	hemoglobin concentration QTL 5 (mouse)					9	91641084	124595110	Mouse
13463475	Hctq7_m	hematocrit QTL 7 (mouse)					9	91641084	124595110	Mouse
13463477	Rbc9_m	red blood cell count 9 (mouse)					9	91641084	124595110	Mouse
13463478	Mchq18_m	mean corpuscular hemoglobin QTL 18 (mouse)					9	91641084	124595110	Mouse
13463480	Mchcq2_m	mean corpuscular hemoglobin concentration QTL 2 (mouse)					9	91641084	124595110	Mouse
12904937	Edlmmq9_m	extensor digitorum longus muscle mass QTL 9 (mouse)					9	91683173	124595110	Mouse
12904947	Tammq7_m	tibialis anterior muscle mass QTL 7 (mouse)					9	91683173	124595110	Mouse
12904961	Gmmq7_m	gastrocnemius muscle mass QTL 7 (mouse)					9	91683173	124595110	Mouse
1302001	Bdln5_m	body length 5 (mouse)			Not determined		9	93762590	124595110	Mouse
1301484	Bwq6_m	body weight (mouse)			Not determined		9	93762590	124595110	Mouse
14746992	Manh67_m	mandible shape 67 (mouse)					9	94036768	124595110	Mouse
11537364	Cnes5_m	C. neoformans susceptibility locus 5 (mouse)					9	96917590	124595110	Mouse
1301297	Lcho1_m	liver cholesterol 1 (mouse)			Not determined		9	101060861	124595110	Mouse
1357627	Tgq2_m	triglyceride QTL 2 (mouse)			Not determined		9	102000187	124595110	Mouse
1357648	Obq18_m	obesity QTL 18 (mouse)			Not determined		9	102000187	124595110	Mouse
1301789	Pbwg4_m	postnatal body weight growth 4 (mouse)			Not determined		9	103289445	124595110	Mouse
10412290	Pvacm1l_m	plasma vascular cell adhesion molecule 1 levels (mouse)			Not determined		9	103289445	124595110	Mouse
12879896	Berr3_m	berghei resistance locus 3 (mouse)					9	103289445	124595110	Mouse

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	XR_380025	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_871392	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC108846	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Reference Sequences

RefSeq Acc Id:

ENSMUST00000213143

RefSeq Status:

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm38.p6 Ensembl	9	122,436,112 - 122,438,134 (-)	Ensembl

RefSeq Acc Id:

ENSMUST00000214817

RefSeq Status:

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm38.p6 Ensembl	9	122,435,818 - 122,438,165 (-)	Ensembl

RefSeq Acc Id:

XR_380025

RefSeq Status:

Type:

NON-CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	9	122,264,947 - 122,267,199 (-)	NCBI
GRCm38	9	122,435,882 - 122,438,134 (-)	NCBI

Sequence:

show sequence

ACTCTGCAACGGCTTCCCACACATGCTCAAGCATCGTGTGATGGAAGATTTATCATTTTCCTTT
CATAGTTAAGCCTTTGATACATTAGGAATTTATTTCCTGTCACGTGGGATCCTACTTCATTTCC
TTTCTAATCGATAACAAGTGATGTCATTTTATTTTATTGAAGCATTATTCTTTCAGCCAATGCA
GATACTAACAGCTCTGTATGGTAAACTGCAGTGAATTCTGGGATGTGTATCTAGCTCCTGTCTC
TGACTCACCTCTTCCTTTCCTATCACCACACTGCTTTGACAATGAGTGGCTTGTGGTATATTTT
AGCGTCAATCGAGGCAAGGGCAGCCTTCCAAGTTTTCACTTTCTCATCCTTCTGGAGTGCAGGT
TCCTCTCTGTGAACTGTGAAGCCATTGTGTTAGGAAGCTAATGGCAGAAGGCCTGGAATTGGGC
TGAGTGGTTTCACAGAAATATGAGATGAATTTTCTTGGCACGGCCCCAATCCTGATGAGTGATT
CAGCTTCAGAGCTACAGTCCACAGATGTCCCTTCTGTTCGTGTGTCACAGACCAAATCAAATTA
GATGGCCCTGCTGACTTCAAAAGGACAGGAAAATGCTACCCTGAGGGGAGGGCAGTGGGAAGTT
GAGGAATATTAATAGGGGAGATGACACACCTGTGGGCTGAGTCTATTCCAGCTGCCAGGAGTCT
TGAACTTCTTCCTTCACAGTCAGGAAGCTGAGAGTTCAAGATCAAGGGAGCAGGTGTGCCCAGA
TCTAAACACTCTCATCCCTCACAAATGTGCCTGAAGACTTGACTCCCAGGTGAACGTCGAAGTC
CAAAGTCAGGCCTTTTTCCACACGGAGTCCACTTCAGTGGCGAAACTTACTGAGGAATGTCTCA
CTGGATCCACATCTAAGCTTTGAATCCATAGCCATCACAATTCATACAATGGTATGCTGCCTTT
CCTTCAAAAAGAACTTTGGGGGCTGGGGTGAAGTGCTCATTGTGCC

hide sequence

RefSeq Acc Id:

XR_871392

RefSeq Status:

Type:

NON-CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	9	122,264,947 - 122,267,182 (-)	NCBI
GRCm38	9	122,435,882 - 122,438,117 (-)	NCBI

Sequence:

show sequence

CACACATGCTCAAGCATCGTGTGATGGAAGATTTATCATTTTCCTTTCATAGTGTGCCCAGATC
TAAACACTCTCATCCCTCACAAATGTGCCTGAAGACTTGACTCCCAGGTGAACGTCGAAGTCCA
AAGTCAGGCCTTTTTCCACACGGAGTCCACTTCAGTGGCGAAACTTACTGAGGAATGTCTCACT
GGATCCACATCTAAGCTTTGAATCCATAGCCATCACAATTCATACAATGGTATGCTGCCTTTCC
TTCAAAAAGAACTTTGGGGGCTGGGGTGAAGTGCTCATTGTGCC

hide sequence

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSMUSG00000111146	Ensembl, ENTREZGENE
Ensembl Transcript	ENSMUST00000214817	ENTREZGENE
MGD	MGI:5594613	ENTREZGENE
NCBI Gene	Gm35454	ENTREZGENE
PhenoGen	Gm35454	PhenoGen

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)