Mir219b (microRNA 219b) - Rat Genome Database
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Gene: Mir219b (microRNA 219b) Mus musculus
Analyze
Symbol: Mir219b
Name: microRNA 219b
RGD ID: 9620836
MGI Page MGI
Description: Orthologous to human MIR219B (microRNA 219b).
Type: ncrna
RefSeq Status: PROVISIONAL
Also known as: mmu-mir-219b
RGD Orthologs
Human
Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm38 - Mouse Genome Assembly GRCm38
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39229,735,659 - 29,735,723 (+)NCBIGRCm39mm39
GRCm39 Ensembl229,735,659 - 29,735,723 (+)Ensembl
GRCm38229,845,647 - 29,845,711 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl229,845,647 - 29,845,711 (+)EnsemblGRCm38mm10GRCm38
Celera229,552,741 - 29,552,805 (+)NCBICelera
Cytogenetic Map2BNCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:16381832   PMID:23325850  


Genomics

Comparative Map Data
Mir219b
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39229,735,659 - 29,735,723 (+)NCBIGRCm39mm39
GRCm39 Ensembl229,735,659 - 29,735,723 (+)Ensembl
GRCm38229,845,647 - 29,845,711 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl229,845,647 - 29,845,711 (+)EnsemblGRCm38mm10GRCm38
Celera229,552,741 - 29,552,805 (+)NCBICelera
Cytogenetic Map2BNCBI
MIR219B
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl9128,392,621 - 128,392,708 (+)EnsemblGRCh38hg38GRCh38
GRCh389128,392,621 - 128,392,708 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh379131,154,900 - 131,154,987 (+)NCBIGRCh37GRCh37hg19GRCh37
Cytogenetic Map9q34.11NCBI
HuRef9100,767,723 - 100,767,810 (+)NCBIHuRef
CHM1_19131,305,925 - 131,306,012 (+)NCBICHM1_1
Mir2964
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2313,118,623 - 13,118,722 (+)NCBI
Rnor_6.0 Ensembl38,407,427 - 8,407,526 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.038,407,427 - 8,407,526 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.0313,750,973 - 13,751,072 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera37,896,042 - 7,896,141 (+)NCBICelera
Cytogenetic Map3p12NCBI


QTLs in Region (GRCm38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1301769Orgwq2_morgan weight QTL 2 (mouse)Not determined2388608993591306Mouse
1301980Fcsa5_mfemoral cross-sectional area 5 (mouse)Not determined2778910341789249Mouse
1301790Pcfm1_mperiosteal circumference and femur length 1 (mouse)Not determined2834628442346384Mouse
10043876Adip22_madiposity 22 (mouse)Not determined2841803942418228Mouse
1300624Insq7_minsulin QTL 7 (mouse)Not determined2949443443494563Mouse
10755513Amzn4_manatomical modifier of Zfp423 4 (mouse)2949443443494563Mouse
8552707Cia23_mcollagen induced arthritis QTL 23 (mouse)Not determined21212472666726109Mouse
1301641Sbmd2_mspinal bone mineral density 2 (mouse)Not determined21432455548324701Mouse
1357454Kidq1_mkidney weight QTL 1 (mouse)Not determined220892967119064359Mouse
1357436Splq1_mspleen weight QTL 1 (mouse)Not determined220892967119064359Mouse
1357829Lvrq1_mliver weight QTL 1 (mouse)Not determined220892967119064359Mouse
1558899Egq1_mearly growth QTL 1 (mouse)Not determined220892967119064359Mouse
1558738W6q1_mweight 6 weeks QTL 1 (mouse)Not determined220892967119064359Mouse
1558966W10q9_mweight 10 weeks QTL 9 (mouse)Not determined220892967119064359Mouse
1558915W3q1_mweight 3 weeks QTL 1 (mouse)Not determined220892967119064359Mouse
1357681Hrtq1_mheart weight QTL 1 (mouse)Not determined220892967119064359Mouse
1357881Estoq1_membryo survival total QTL 1 (mouse)Not determined220892967119064359Mouse
39128209Lwq14_mliver weight QTL 14 (mouse)220892967119064359Mouse
4141708Pbwg1.2_mpostnatal body weight growth 1.2 (mouse)Not determined2123971355239859Mouse
1301376Etohc1_methanol consumption 1 (mouse)Not determined22123971355239859Mouse
13463470Tubisq1_mtubulointerstitial injury severity, QTL 1 (mouse)22379913357799257Mouse
1302174Dssc2_mdextran sodium sulfate induced colitis QTL2 (mouse)Not determined224334620148858457Mouse
26884438Sklq12_mskull length QTL 12, 16 week (mouse)22470000055000000Mouse
8552705Cia25_mcollagen induced arthritis 25 (mouse)Not determined22478910333633160Mouse
8552706Cia24_mcollagen induced arthritis QTL 24 (mouse)Not determined22478910333633160Mouse
4142130Pgis2_mproteoglycan induced spondylitis 2 (mouse)Not determined22541803957081799Mouse
12904005Cfq2_mconditioned fear QTL 2 (mouse)22713263056506216Mouse
1300577Capsq1_mcapsaicin sensitivity related QTL 1 (mouse)Not determined22771204884183040Mouse
14746979Manh51_mmandible shape 51 (mouse)22907111763071117Mouse
14746997Mancz2_mmandible centroid size 2 (mouse)22907111763071117Mouse
4141854T2dm2sa_mtype 2 diabetes mellitus 2 in SMXA RI mice (mouse)Not determined229417935148533014Mouse

miRNA Target Status

Predicted Targets
Summary Value
Count of predictions:8340
Count of gene targets:4355
Count of transcripts:6363
Interacting mature miRNAs:mmu-miR-219b-3p, mmu-miR-219b-5p
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NR_106110 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AL928926 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000198317
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl229,845,647 - 29,845,711 (+)Ensembl
RefSeq Acc Id: NR_106110
RefSeq Status: PROVISIONAL
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39229,735,659 - 29,735,723 (+)NCBI
GRCm38229,845,647 - 29,845,711 (+)NCBI
Celera229,552,741 - 29,552,805 (+)NCBI
Sequence:

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:5562756 AgrOrtholog
Ensembl Genes ENSMUSG00000105010 Ensembl, ENTREZGENE
Ensembl Transcript ENSMUST00000198317 ENTREZGENE
MGD MGI:5562756 ENTREZGENE
miRBase MI0024990 ENTREZGENE
NCBI Gene Mir219b ENTREZGENE
PhenoGen Mir219b PhenoGen
RNAcentral URS0000527B00 RNACentral
  URS0000603CA3 RNACentral
  URS000075EC5E RNACentral