Gm15991 (predicted gene 15991) - Rat Genome Database
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Gene: Gm15991 (predicted gene 15991) Mus musculus
Analyze
Symbol: Gm15991
Name: predicted gene 15991
RGD ID: 9620048
MGI Page MGI
Description:
Type: ncrna
RefSeq Status: MODEL
Latest Assembly: GRCm38 - Mouse Genome Assembly GRCm38
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39868,402,180 - 68,480,643 (+)NCBIGRCm39mm39
GRCm38867,946,687 - 68,027,991 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl867,956,769 - 67,978,051 (+)EnsemblGRCm38mm10GRCm38
Celera870,491,282 - 70,554,736 (+)NCBICelera
Cytogenetic Map8B3.3NCBI
cM Map833.54NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:24200680   PMID:24316575   PMID:27899360  


Genomics


QTLs in Region (GRCm38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1558870Eae36_mexperimental allergic encephalomyelitis susceptibility 36 (mouse)Not determined81472316071045600Mouse
1357811Orq3_movulation rate QTL 3 (mouse)Not determined83201654471287993Mouse
4141437W10q14_mweight 10 weeks QTL 14 (mouse)Not determined3201654471287993Mouse
4141172W6q9_mweight 6 weeks QTL 9 (mouse)Not determined3201654471287993Mouse
4140966Egq12_mearly growth QTL 12 (mouse)Not determined3201654471287993Mouse
4140967Bmd39_mbone mineral density 39 (mouse)Not determined832016544117238700Mouse
1558875Eae31_mexperimental allergic encephalomyelitis susceptibility 31 (mouse)Not determined834642776114837007Mouse
1301013Capsq4_mcapsaicin sensitivity related QTL 4 (mouse)Not determined83616300092728652Mouse
27226754Femd6_mfemur midshaft diameter 6, 10 week (mouse)837400000109600000Mouse
12904744Carcdq1_mcardiac collagen deposition QTL 1 (mouse)83970925694689598Mouse
1301544Iba3_minduction of brown adipocytes 3 (mouse)Not determined84429488078295025Mouse
1301717Adip4_madiposity 4 (mouse)Not determined84763703081637146Mouse
10766453Char11_mP. chabaudi malaria resistance QTL 11 (mouse)84763703081637146Mouse
1301441Skull11_mskull morphology 11 (mouse)Not determined84773713481737254Mouse
1357715Alaa3_malopecia areata 3 (mouse)Not determined84879293982793021Mouse
14746987Manh64_mmandible shape 64 (mouse)85005330684053306Mouse
14747005Mancz7_mmandible centroid size 7 (mouse)85005330684053306Mouse
14700686Civq3_mcerebral infarct volume QTL 3 (mouse)85188219185882191Mouse
1301506Aevm1_mautoimmune extremity vasculitis in MRL mice 1 (mouse)Not determined85428781788287993Mouse
1301952Im3_mimmunoregulatory 3 (mouse)Not determined85470661488706763Mouse
10412287Carg3_mCandida albicans resistance gene 3 (mouse)Not determined85554502889545028Mouse
11353828Gf7_mgonadal fat pad weight 7 (mouse)85820147992201479Mouse
10043975Obq31_mobesity QTL 31 (mouse)Not determined85840977692409776Mouse
1301688Orch6_mautoimmune orchitis resistance 6 (mouse)Not determined86078685094786976Mouse
4141285Tgq18_mtriglyceride QTL 18 (mouse)Not determined6346010797460107Mouse
4141797Skmw16_mskeletal muscle weight 16 (mouse)Not determined86393954797939696Mouse
1357787Vtbt5_mvertebral trabecular bone trait 5 (mouse)Not determined86535776899357920Mouse
10043992Hbnr11_mHeligmosomoides bakeri nematode resistance 11 (mouse)Not determined86560020799600347Mouse

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:96
Count of miRNA genes:93
Interacting mature miRNAs:95
Transcripts:ENSMUST00000127631
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000127631
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl867,956,770 - 67,978,051 (+)Ensembl
RefSeq Acc Id: ENSMUST00000212123
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl867,956,769 - 67,960,333 (+)Ensembl
RefSeq Acc Id: XR_001778565
RefSeq Status:
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39868,402,758 - 68,466,596 (+)NCBI
GRCm38867,953,474 - 68,013,944 (+)NCBI
Sequence:
RefSeq Acc Id: XR_001778566
RefSeq Status:
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39868,402,758 - 68,466,596 (+)NCBI
GRCm38867,953,474 - 68,013,944 (+)NCBI
Sequence:
RefSeq Acc Id: XR_003947557
RefSeq Status:
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39868,402,180 - 68,466,596 (+)NCBI
GRCm38867,946,687 - 68,013,944 (+)NCBI
Sequence:
RefSeq Acc Id: XR_003947558
RefSeq Status:
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39868,402,758 - 68,480,643 (+)NCBI
GRCm38867,953,474 - 68,027,991 (+)NCBI
Sequence:
RefSeq Acc Id: XR_003947559
RefSeq Status:
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39868,402,758 - 68,466,596 (+)NCBI
GRCm38867,953,474 - 68,013,944 (+)NCBI
Sequence:
RefSeq Acc Id: XR_870477
RefSeq Status:
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39868,402,758 - 68,466,596 (+)NCBI
GRCm38867,953,474 - 68,013,944 (+)NCBI
Sequence:
Promoters
RGD ID:15093461
Promoter ID:EPDNEWNC_M1362
Type:single initiation site
Name:Gm15991_1
Description:predicted gene 15991 [Source:MGI Symbol;Acc:MGI:3801813]
SO ACC ID:SO:0000170
Source:EPDNEWNC (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38867,956,769 - 67,956,829EPDNEWNC

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000087266 Ensembl
MGD MGI:3801813 ENTREZGENE
NCBI Gene Gm15991 ENTREZGENE
PhenoGen Gm15991 PhenoGen