Mir7054 (microRNA 7054) - Rat Genome Database
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Gene: Mir7054 (microRNA 7054) Mus musculus
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Symbol: Mir7054
Name: microRNA 7054
RGD ID: 9619216
MGI Page MGI
Description: microRNAs (miRNAs) are short (20-24 nt) non-coding RNAs that are involved in post-transcriptional regulation of gene expression in multicellular organisms by affecting both the stability and translation of mRNAs. miRNAs are transcribed by RNA polymerase II as part of capped and polyadenylated primary transcripts (pri-miRNAs) that can be either protein-coding or non-coding. The primary transcript is cleaved by the Drosha ribonuclease III enzyme to produce an approximately 70-nt stem-loop precursor miRNA (pre-miRNA), which is further cleaved by the cytoplasmic Dicer ribonuclease to generate the mature miRNA and antisense miRNA star (miRNA*) products. The mature miRNA is incorporated into a RNA-induced silencing complex (RISC), which recognizes target mRNAs through imperfect base pairing with the miRNA and most commonly results in translational inhibition or destabilization of the target mRNA. The RefSeq represents the predicted microRNA stem-loop. [provided by RefSeq, Sep 2009]
Type: ncrna
RefSeq Status: PROVISIONAL
Also known as: Gm27557; mmu-mir-7054
Latest Assembly: GRCm38 - Mouse Genome Assembly GRCm38
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39744,661,850 - 44,661,911 (-)NCBIGRCm39mm39
GRCm38745,012,426 - 45,012,487 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl745,012,426 - 45,012,487 (-)EnsemblGRCm38mm10GRCm38
Celera740,463,985 - 40,464,046 (-)NCBICelera
Cytogenetic Map7B3NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:16381832   PMID:22955976  


Genomics


QTLs in Region (GRCm38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1300722Sle3_msystemic lupus erythmatosus susceptibility 3 (mouse)Not determined7346321287493512Mouse
38501068Tip1_mtuberculosis immunophenotype 1, spleen CFU (mouse)7360000072900000Mouse
25314307Mlh1fc2_mMLH1 foci count 2 (mouse)76500000133900000Mouse
10449139Eosn1_meosinophil differential 1 (mouse)71278145246781452Mouse
10449158Eosn3_meosinophil differential 3 (mouse)71278145246781452Mouse
4141566Femwf8_mfemur work to failure 8 (mouse)Not determined1333306047333196Mouse
11522751Cocia17_mcocaine-induced activity, QTL 17 (mouse)71343577947435779Mouse
25314314Sccor1_msynaptonemal complex length to mean MLH1 count ratio 1 (mouse)71360000047700000Mouse
1559016Drsi_mDCC-related Spp1 induction (mouse)Not determined71690336849509583Mouse
10412199Sst2_msusceptibility to tuberculosis 2 (mouse)Not determined718994869119886157Mouse
1301158Eae4_msusceptibility to experimental allergic encephalomyelitis 4 (mouse)Not determined719413473142366067Mouse
1301622Eae12_msusceptibility to experimental allergic encephalomyelitis 12 (mouse)Not determined71958059053580679Mouse
1301052Bhr6_mbronchial hyperresponsiveness 6 (mouse)Not determined72014282554142942Mouse
12904742Litsq2_mlitter size QTL 2 (mouse)72302446357024609Mouse
1301709Bdt4_mbone density traits 4 (mouse)Not determined72323914857239292Mouse
11354952Pdcc1_mplasmacytoid dentritic cell compartment 1 (mouse)72341710757417107Mouse
1301969Lbw5_mlupus NZB x NZW 5 (mouse)Not determined72719819161202351Mouse
12790989Tgl6_mtriglyceride 6 (mouse)72789112561891125Mouse
4141805Sle19_msystematic lupus erythematosus susceptibility 19 (mouse)Not determined3033306081485905Mouse
26884404Huml1_mhumerus length 1, 5 week (mouse)730500000109400000Mouse
1301175Ap7q_malcohol preference 7 QTL (mouse)Not determined73206509766065329Mouse
1300996Aorls2_maortic lesion size 2 (mouse)Not determined73274478466744933Mouse
4141909W10q18_mweight 10 weeks QTL 18 (mouse)Not determined3379830258499217Mouse
4142218W6q17_mweight 6 weeks QTL 17 (mouse)Not determined3379830258499217Mouse
4142102Tailq5_mtail length QTL 5 (mouse)Not determined3379830258499217Mouse
4142003W3q10_mweight 3 weeks QTL 10 (mouse)Not determined3379830258499217Mouse
1357469Kidq5_mkidney weight QTL 5 (mouse)Not determined73379830258499217Mouse
1357731Lvrq6_mliver weight QTL 6 (mouse)Not determined73379830258499217Mouse
1357634Splq7_mspleen weight QTL 7 (mouse)Not determined73379830258499217Mouse
1357883Epfq5_mepididymal fat pad weight QTL 5 (mouse)Not determined73379830258499217Mouse
39128210Lwq19_mliver weight QTL 19 (mouse)73379830258499217Mouse
1559000Ossc1_mosteosarcoma susceptibility 1 (mouse)Not determined73440327768403475Mouse
38501071Stsl6_mSalmonella typhimurium susceptibility locus 6 (mouse)73450000051500000Mouse
10045622Heal20_mwound healing/regeneration 20 (mouse)Not determined73466713968667295Mouse
1357586Mdmsc3_mmodifier of muscularity 3 (mouse)Not determined73479812168798270Mouse
1301514Rigs1_mradiation induced gastroschisis 1 (mouse)Not determined73658059092745138Mouse
1301082Bbaa16_mB.burgdorferi-associated arthritis 16 (mouse)Not determined736580590116817642Mouse
25314301Vmm3_mvariable multisystem mineralization 3, lung (mouse)73760000072400000Mouse
25314303Vmm4_mvariable multisystem mineralization 4, kidney (mouse)73760000087400000Mouse
1300878Skts1_mskin tumor susceptibility 1 (mouse)Not determined73824163872241834Mouse
10402488Dipa2_mdrug induced psychomotor activation 2 (mouse)Not determined73877180072771936Mouse
1300791Abbp3_mA/J and C57BL/6 blood pressure 3 (mouse)Not determined740024463103860803Mouse
4141929Chlq18_mcirculating hormone level QTL 18 (mouse)Not determined74149907275499217Mouse
11252140Fdr1_mfat response to dietary restriction 1 (mouse)74149907275499217Mouse
25394571Skmw59_mskeletal muscle weight 59, TA (mouse)74457551945025958Mouse
25394574Skmw61_mskeletal muscle weight 61, EDL (mouse)74457551945025958Mouse
25394572Skmw60_mskeletal muscle weight 60, gastroc (mouse)74490174045053023Mouse

miRNA Target Status

Predicted Targets
Summary Value
Count of predictions:32498
Count of gene targets:10013
Count of transcripts:17020
Interacting mature miRNAs:mmu-miR-7054-3p, mmu-miR-7054-5p
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NR_106021 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC126256 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000183606
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl745,012,426 - 45,012,487 (-)Ensembl
RefSeq Acc Id: NR_106021
RefSeq Status: PROVISIONAL
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39744,661,850 - 44,661,911 (-)NCBI
GRCm38745,012,426 - 45,012,487 (-)NCBI
Celera740,463,985 - 40,464,046 (-)NCBI
Sequence:

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000098839 Ensembl, ENTREZGENE
Ensembl Transcript ENSMUST00000183606 ENTREZGENE
MGD MGI:5530939 ENTREZGENE
miRBase MI0022903 ENTREZGENE
NCBI Gene Mir7054 ENTREZGENE
PhenoGen Mir7054 PhenoGen
RNAcentral URS000075AAD7 RNACentral
  URS000075DDAF RNACentral
  URS000075EA30 RNACentral