Gm16169 (predicted gene 16169) - Rat Genome Database

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Gene: Gm16169 (predicted gene 16169) Mus musculus
Analyze
Symbol: Gm16169
Name: predicted gene 16169
RGD ID: 9617046
MGI Page MGI
Description:
Type: ncrna (Ensembl: lncRNA)
RefSeq Status: VALIDATED
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391711,026,722 - 11,038,505 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1711,026,721 - 11,045,512 (+)EnsemblGRCm39 Ensembl
GRCm381710,807,835 - 10,819,618 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1710,807,834 - 10,826,625 (+)EnsemblGRCm38mm10GRCm38
Celera1710,847,812 - 10,866,764 (+)NCBICelera
Cytogenetic Map17A1NCBI
cM Map177.8NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12466851   PMID:16141072   PMID:16141073  


Genomics

Variants

.
Variants in Gm16169
329 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:141
Count of miRNA genes:116
Interacting mature miRNAs:121
Transcripts:ENSMUST00000159155, ENSMUST00000162432
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1357452Vtbt18_mvertebral trabecular bone trait 18 (mouse)Not determined17120975022Mouse
1302196Myaa1_mmodifier of Yaa 1 (mouse)Not determined17120975022Mouse
1357902Obq19_mobesity QTL 19 (mouse)Not determined17125662076Mouse
12910982Pifs2_mpeptide-induced fatal syndrome 2 (mouse)17126189355Mouse
1357743Lith3_mlithogenic gene 3 (mouse)Not determined17126194456Mouse
1301615Cfld3_mcystic fibrosis lung disease 3 (mouse)Not determined17127081639Mouse
1300613Pcyts4_mplasmacytoma susceptibility 4 (mouse)Not determined17127081639Mouse
1302100Circp2_mcircadian photosensitivity 2 (mouse)Not determined17129198453Mouse
12910527Nrq1a_mnoise-induced hearing loss resistant QTL 1a (mouse)17129198453Mouse
12910528Nrq1_mnoise-induced hearing loss resistant QTL 1 (mouse)17129198453Mouse
13524851Asrq8_macoustic startle response 8 (mouse)17131030170Mouse
10412276Leci2_mleukocyte endothelial cell interactions 2 (mouse)Not determined17334817537348299Mouse
1357680Idd23_minsulin dependent diabetes susceptibility 23 (mouse)Not determined17397489026401133Mouse
1300890Bhr3_mbronchial hyperresponsiveness 3 (mouse)Not determined17397489048866091Mouse
1301327Lmr7_mleishmaniasis resistance 7 (mouse)Not determined17485475227715939Mouse
4141215Mnic1_mmacronutrient intake, carbohydrate 1 (mouse)Not determined485475245670266Mouse
1300706Alan1_malloantigen response 1 (mouse)Not determined17485475246469702Mouse
1357789Kdnw3_mkidney weight 3 (mouse)Not determined17485475247885665Mouse
4141272Tfv1_mtotal food volume 1 (mouse)Not determined485475265637357Mouse
10043949Pbft7_mpercent body fat 7 (mouse)Not determined17689393640893936Mouse
4141608Phl1_mprogressive hearing loss 1 (mouse)Not determined17787584329487423Mouse
13824987Flal1_mfatty liver accumulation QTL 1, females only (mouse)17821883211218887Mouse
1301935Skull24_mskull morphology 24 (mouse)Not determined17858491442585149Mouse
1300787Cd8mts5_mCD8 memory T cell subset 5 (mouse)Not determined17858491442585149Mouse
1301338Lmr1_mleishmaniasis resistance 1 (mouse)Not determined171008134086996400Mouse
1302028Asbb3_mautoimmune susceptibility in C57BL/6J and BALB/c 3 (mouse)Not determined171087811944878219Mouse


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000159155
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1711,026,726 - 11,035,951 (+)Ensembl
GRCm38.p6 Ensembl1710,807,839 - 10,817,064 (+)Ensembl
RefSeq Acc Id: ENSMUST00000162432
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1711,026,721 - 11,045,512 (+)Ensembl
GRCm38.p6 Ensembl1710,807,834 - 10,826,625 (+)Ensembl
RefSeq Acc Id: NR_167741
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391711,026,722 - 11,038,505 (+)NCBI
GRCm381710,807,835 - 10,819,618 (+)NCBI
Sequence:
Promoters
RGD ID:13674734
Promoter ID:EPDNEW_M21515
Type:multiple initiation site
Name:AK137341_1
Description:n/a
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381710,807,835 - 10,807,895EPDNEW
RGD ID:15094752
Promoter ID:EPDNEWNC_M2670
Type:multiple initiation site
Name:Gm16169_1
Description:predicted gene 16169 [Source:MGI Symbol;Acc:MGI:3802011]
SO ACC ID:SO:0000170
Source:EPDNEWNC (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381710,807,835 - 10,807,895EPDNEWNC

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000089907 Ensembl
MGD MGI:3802011 ENTREZGENE
NCBI Gene Gm16169 ENTREZGENE
PhenoGen Gm16169 PhenoGen
RNAcentral URS0001BBE350 RNACentral