Gm11954 (predicted gene 11954) - Rat Genome Database

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Gene: Gm11954 (predicted gene 11954) Mus musculus
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Symbol: Gm11954
Name: predicted gene 11954
RGD ID: 9614182
MGI Page MGI
Description:
Type: protein-coding (Ensembl: processed_pseudogene)
RefSeq Status: MODEL
Previously known as: ubiquitin-conjugating enzyme E2 L3 pseudogene; ubiquitin-conjugating enzyme E2 L3-like
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39113,952,424 - 3,953,021 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl113,952,457 - 3,952,805 (+)EnsemblGRCm39 Ensembl
GRCm38114,002,418 - 4,003,021 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl114,002,457 - 4,002,805 (+)EnsemblGRCm38mm10GRCm38
Celera114,497,689 - 4,498,205 (+)NCBICelera
Cytogenetic Map11A1NCBI
cM Map112.82NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Variants

.
Variants in Gm11954
16 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:116
Count of miRNA genes:110
Interacting mature miRNAs:116
Transcripts:ENSMUST00000121403
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1357722Vtbt11_mvertebral trabecular bone trait 11 (mouse)Not determined11123880487Mouse
1300768Tshp9_mtooth shape 9 (mouse)Not determined11125976374Mouse
1301765Skull15_mskull morphology 15 (mouse)Not determined11125976374Mouse
1300661Lmr6_mleishmaniasis resistance 6 (mouse)Not determined11125976374Mouse
10044008Hbnr15_mHeligmosomoides bakeri nematode resistance 15 (mouse)Not determined1122705234227232Mouse
1300599Cocrb11_mcocaine related behavior 11 (mouse)Not determined11267035536671472Mouse
27095914Pglq16_mpelvic girdle length QTL 16, 16 week (mouse)11325000018150000Mouse
27095919Pglq10_mpelvic girdle length QTL 10, 10 week (mouse)11325000018450000Mouse
27095925Pglq5_mpelvic girdle length QTL 5, 5 week (mouse)11325000019750000Mouse
27095904Scvln12_msacral vertebrae length 2, 10 week (mouse)11325000034495048Mouse
27095909Scvln6_msacral vertebrae length 2, 5 week (mouse)11325000044090827Mouse
27226798Scvln18_msacral vertebrae length 2, 16 week (mouse)11325000060690826Mouse
26884446Sklq10_mskull length QTL 10, 10 week (mouse)11325000062890826Mouse
26884453Sklq16_mskull length QTL 16, 16 week (mouse)11325000072690826Mouse
13208559Wght10_mweight 10 (mouse)11395000088890826Mouse
13208558Lgth12_mbody length 12 (mouse)11395000094890826Mouse


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_036157121 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AL807395 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSMUST00000121403
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl113,952,457 - 3,952,805 (+)Ensembl
GRCm38.p6 Ensembl114,002,457 - 4,002,805 (+)Ensembl
RefSeq Acc Id: XM_036157121   ⟹   XP_036013014
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39113,952,424 - 3,953,021 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_036013014 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_036013014   ⟸   XM_036157121


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000084170 Ensembl
MGD MGI:3649565 ENTREZGENE
NCBI Gene Gm11954 ENTREZGENE
PhenoGen Gm11954 PhenoGen