Gm13657 (predicted gene 13657) - Rat Genome Database

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Gene: Gm13657 (predicted gene 13657) Mus musculus
Analyze
Symbol: Gm13657
Name: predicted gene 13657
RGD ID: 9613456
MGI Page MGI
Description:
Type: ncrna (Ensembl: lncRNA)
RefSeq Status: MODEL
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39275,607,210 - 75,621,631 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl275,607,495 - 75,612,650 (+)EnsemblGRCm39 Ensembl
GRCm38275,776,865 - 75,791,277 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl275,777,188 - 75,782,306 (+)EnsemblGRCm38mm10GRCm38
Celera277,434,056 - 77,452,939 (+)NCBICelera
Cytogenetic Map2C3NCBI
cM Map244.77NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12466851   PMID:16141072   PMID:16141073   PMID:24200680   PMID:27899360  


Genomics

Variants

.
Variants in Gm13657
524 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:161
Count of miRNA genes:150
Interacting mature miRNAs:160
Transcripts:ENSMUST00000135682
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1301769Orgwq2_morgan weight QTL 2 (mouse)Not determined2388712693421651Mouse
1357881Estoq1_membryo survival total QTL 1 (mouse)Not determined220897778118894840Mouse
1357454Kidq1_mkidney weight QTL 1 (mouse)Not determined220897778118894840Mouse
1357436Splq1_mspleen weight QTL 1 (mouse)Not determined220897778118894840Mouse
39128209Lwq14_mliver weight QTL 14 (mouse)220897778118894840Mouse
1558899Egq1_mearly growth QTL 1 (mouse)Not determined220897778118894840Mouse
1558966W10q9_mweight 10 weeks QTL 9 (mouse)Not determined220897778118894840Mouse
1558915W3q1_mweight 3 weeks QTL 1 (mouse)Not determined220897778118894840Mouse
1558738W6q1_mweight 6 weeks QTL 1 (mouse)Not determined220897778118894840Mouse
1357681Hrtq1_mheart weight QTL 1 (mouse)Not determined220897778118894840Mouse
1302174Dssc2_mdextran sodium sulfate induced colitis QTL2 (mouse)Not determined224224632148700377Mouse
1300577Capsq1_mcapsaicin sensitivity related QTL 1 (mouse)Not determined22760206084013384Mouse
4141854T2dm2sa_mtype 2 diabetes mellitus 2 in SMXA RI mice (mouse)Not determined229307947148374934Mouse
4141236Hbnr5_mHeligmosomoides bakeri nematode resistance 5 (mouse)Not determined31214567105143570Mouse
1301109Dntcs2_mdental caries susceptibility 2 (mouse)Not determined240885493114910165Mouse
1301480Pbwg1_mpostnatal body weight growth 1 (mouse)Not determined24182071975820843Mouse
4141069Pbwg1.5_mpostnatal body weight growth 1.5 (mouse)Not determined4352061277520756Mouse
1300788Cia2_mcollagen induced arthritis QTL 2 (mouse)Not determined24352061277520756Mouse
1300671Cia4_mcollagen induced arthritis QTL 4 (mouse)Not determined24352061277520756Mouse
1301402Ap2q_malcohol preference 2 QTL (mouse)Not determined24352061277520756Mouse
1301411Pitm1_mprion incubation time 1 (mouse)Not determined24352061277520756Mouse
10755532Lymph5_mlymphocyte differential 5 (mouse)24419901778199017Mouse
1301344Lith1_mlithogenic gene 1 (mouse)Not determined245347635145312647Mouse
11532740Pbwg1.10_mpostnatal body weight growth 1.10 (mouse)24813241282132495Mouse
1558820Moo1_mmodifier of Odc1 (mouse)Not determined174826974682269934Mouse
1301747Eae21_mexperimental allergic encephalomyelitis 21 (mouse)Not determined24826974682269934Mouse
1301235Alcw4_malcohol withdrawal 4 (mouse)Not determined24826974682269934Mouse
1300568Hdl1_mhigh density lipoprotein (HDL) level 1 (mouse)Not determined24826974682269934Mouse
10755526Lymph1_mlymphocyte differential 1 (mouse)25081931484819314Mouse
1300875Taste1_mtaste-saccharin preference 1 (mouse)Not determined25092317584923278Mouse
1300761Lgth1_mbody length 1 (mouse)Not determined25170327685703425Mouse
13464141Hbbcq3_mhemoglobin concentration QTL 3 (mouse)25244801986448136Mouse
13463471Hctq6_mhematocrit QTL 6 (mouse)25244801986448136Mouse
4141406Alpq2_malcohol preference QTL 2 (mouse)Not determined25752411791524288Mouse
12738429Lfibq18_mliver fibrosis QTL 18 (mouse)25791999191919991Mouse
1357577Trmq3_mT cell ratio modifier QTL 3 (mouse)Not determined260520612119355518Mouse
13824983Vclq1_mcurvilinear velocity QTL 1 (mouse)261830344136841920Mouse
10044002Hdl7_mHDL level 7 (mouse)Not determined26300595497006113Mouse
10053681Lith24_mlithogenic gene 24 (mouse)Not determined26300595497006113Mouse
1301405Etohr_methanol response acute (mouse)Not determined26300595497006113Mouse
1301703Bomd3_mbone mineral density 3 (mouse)Not determined26300595497006113Mouse
1300662Etohila_methanol induced locomotor activity (mouse)Not determined26300595497006113Mouse
1301048Actre2_mactivity response to ethanol 2 (mouse)Not determined26300595497006113Mouse
1301873Hsl1_mhyperoxia susceptibility locus 1 (mouse)Not determined26357015497570301Mouse
5491197Mobq5_mmultigenic obesity QTL 5 (mouse)Not determined265269746162518926Mouse
1301660Iba1_minduction of brown adipocytes 1 (mouse)Not determined267647887101648142Mouse
13463482Mchq17_mmean corpuscular hemoglobin QTL 17 (mouse)267647887101648142Mouse
1301882Etohc2_methanol consumption 2 (mouse)Not determined268724269102724407Mouse
1301948Elsgp3_melevated serum gp70 3 (mouse)Not determined268724269102724407Mouse
4142088Parms1_mpatched associated RMS 1 (mouse)Not determined74524117114123532Mouse
11528549Sluc31_msusceptibility to lung cancer 31 (mouse)274524117129213005Mouse


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000135682
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl275,607,498 - 75,612,650 (+)Ensembl
GRCm38.p6 Ensembl275,777,188 - 75,782,306 (+)Ensembl
RefSeq Acc Id: ENSMUST00000242477
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl275,607,495 - 75,609,446 (+)Ensembl
RefSeq Acc Id: ENSMUST00000243898
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl275,607,498 - 75,609,439 (+)Ensembl
RefSeq Acc Id: ENSMUST00000245691
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl275,607,516 - 75,612,591 (+)Ensembl
RefSeq Acc Id: XR_001783381
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39275,607,224 - 75,609,440 (+)NCBI
GRCm38275,776,880 - 75,779,096 (+)NCBI
Sequence:
RefSeq Acc Id: XR_001783382
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39275,607,210 - 75,621,631 (+)NCBI
GRCm38275,776,865 - 75,791,277 (+)NCBI
Sequence:
RefSeq Acc Id: XR_004941126
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39275,607,214 - 75,612,594 (+)NCBI
Sequence:
RefSeq Acc Id: XR_866479
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39275,607,215 - 75,617,975 (+)NCBI
GRCm38275,776,870 - 75,787,631 (+)NCBI
Sequence:
RefSeq Acc Id: XR_866480
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39275,607,226 - 75,609,256 (+)NCBI
GRCm38275,776,881 - 75,778,912 (+)NCBI
Sequence:
RefSeq Acc Id: XR_866481
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39275,607,225 - 75,609,267 (+)NCBI
GRCm38275,776,881 - 75,778,923 (+)NCBI
Sequence:
Promoters
RGD ID:6877688
Promoter ID:EPDNEW_M2294
Type:initiation region
Name:KY467876_1
Description:n/a
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38275,777,182 - 75,777,242EPDNEW
RGD ID:15092372
Promoter ID:EPDNEWNC_M275
Type:initiation region
Name:Gm13657_1
Description:predicted gene 13657 [Source:MGI Symbol;Acc:MGI:3650031]
SO ACC ID:SO:0000170
Source:EPDNEWNC (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38275,777,182 - 75,777,242EPDNEWNC

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000086813 Ensembl
MGD MGI:3650031 ENTREZGENE
NCBI Gene Gm13657 ENTREZGENE
PhenoGen Gm13657 PhenoGen