Gm15879 (predicted gene 15879) - Rat Genome Database

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Gene: Gm15879 (predicted gene 15879) Mus musculus
Analyze
Symbol: Gm15879
Name: predicted gene 15879
RGD ID: 9607779
MGI Page MGI
Description:
Type: ncrna (Ensembl: lncRNA)
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
NCBI Annotation Information: Genome Annotation Status: not in current annotation release
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39 Ensembl163,850,703 - 3,855,711 (-)EnsemblGRCm39 Ensembl
GRCm38164,029,071 - 4,037,434 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl164,032,839 - 4,037,847 (-)EnsemblGRCm38mm10GRCm38
Celera164,661,191 - 4,669,747 (-)NCBICelera
cM Map162.37NCBI


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:24316575  


Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:232
Count of miRNA genes:195
Interacting mature miRNAs:215
Transcripts:ENSMUST00000139334, ENSMUST00000150906
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000139334
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl163,852,235 - 3,855,711 (-)Ensembl
GRCm38.p6 Ensembl164,034,371 - 4,037,847 (-)Ensembl
RefSeq Acc Id: ENSMUST00000150906
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl163,850,703 - 3,855,383 (-)Ensembl
GRCm38.p6 Ensembl164,032,839 - 4,037,519 (-)Ensembl
RefSeq Acc Id: XR_384623
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38164,029,071 - 4,037,434 (-)NCBI
RefSeq Acc Id: XR_396794
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
Celera164,661,191 - 4,669,747 (-)NCBI
RefSeq Acc Id: XR_875862
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38164,029,071 - 4,037,434 (-)NCBI
RefSeq Acc Id: XR_875863
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38164,029,071 - 4,037,434 (-)NCBI
RefSeq Acc Id: XR_875864
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38164,029,071 - 4,037,434 (-)NCBI
RefSeq Acc Id: XR_882895
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
Celera164,661,191 - 4,669,747 (-)NCBI
RefSeq Acc Id: XR_882896
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
Celera164,661,191 - 4,669,747 (-)NCBI
RefSeq Acc Id: XR_882897
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
Celera164,661,191 - 4,669,747 (-)NCBI
Promoters
RGD ID:15094635
Promoter ID:EPDNEWNC_M2553
Type:initiation region
Name:Gm15879_1
Description:predicted gene 15879 [Source:MGI Symbol;Acc:MGI:3802012]
SO ACC ID:SO:0000170
Source:EPDNEWNC (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38164,037,869 - 4,037,929EPDNEWNC

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000084790 Ensembl
MGD MGI:3802012 ENTREZGENE
NCBI Gene Gm15879 ENTREZGENE
PhenoGen Gm15879 PhenoGen