Gm28729 (predicted gene 28729) - Rat Genome Database
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Gene: Gm28729 (predicted gene 28729) Mus musculus
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Symbol: Gm28729
Name: predicted gene 28729
RGD ID: 9603142
MGI Page MGI
Description: INTERACTS WITH aflatoxin B1 (ortholog)
Type: protein-coding
RefSeq Status: INFERRED
Also known as: NACHT, LRR and PYD domains-containing protein 5; uncharacterized protein Gm28729
RGD Orthologs
Human
Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm38 - Mouse Genome Assembly GRCm38
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39996,368,040 - 96,407,643 (-)NCBIGRCm39mm39
GRCm38996,485,987 - 96,525,852 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl996,486,001 - 96,525,264 (-)EnsemblGRCm38mm10GRCm38
Celera996,044,171 - 96,084,691 (-)NCBICelera
Cytogenetic Map9E3.3NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
aflatoxin B1  (ISO)

References
Additional References at PubMed
PMID:14610273   PMID:24316575  


Genomics

Comparative Map Data
Gm28729
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39996,368,040 - 96,407,643 (-)NCBIGRCm39mm39
GRCm38996,485,987 - 96,525,852 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl996,486,001 - 96,525,264 (-)EnsemblGRCm38mm10GRCm38
Celera996,044,171 - 96,084,691 (-)NCBICelera
Cytogenetic Map9E3.3NCBI
LINC02618
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl3141,660,536 - 141,729,405 (+)EnsemblGRCh38hg38GRCh38
GRCh383141,663,199 - 141,721,074 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh373141,381,934 - 141,426,234 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 363142,863,118 - 142,908,924 (+)NCBINCBI36hg18NCBI36
Celera3139,805,639 - 139,863,267 (+)NCBI
Cytogenetic Map3q23NCBI
CHM1_13141,345,093 - 141,402,942 (+)NCBICHM1_1
LOC102551788
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.08104,376,470 - 104,397,890 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.08103,800,244 - 103,819,596 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.48101,557,567 - 101,588,638 (-)NCBIRGSC3.4rn4RGSC3.4
Celera896,496,539 - 96,521,321 (-)NCBICelera
Cytogenetic Map8q31NCBI


QTLs in Region (GRCm38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
4142042Alpq3_malcohol preference QTL 3 (mouse)Not determined93739490198819654Mouse
4141224Dxmod_mdoxorubicin nephropathy modifier (mouse)Not determined49541121101528921Mouse
1301241Renf1_mrenal failure 1 (mouse)Not determined95212317899910428Mouse
13207569Tcq13_mtotal cholesterol QTL 13 (mouse)959990000109260000Mouse
4141833W10q13_mweight 10 weeks QTL 13 (mouse)Not determined63332429120362868Mouse
4141545Tailaq2_mtail length adjusted QTL 2 (mouse)Not determined63332429120362868Mouse
1357635Splq4_mspleen weight QTL 4 (mouse)Not determined963332429120362868Mouse
1301636Lith5_mlithogenic gene 5 (mouse)Not determined966207024100207122Mouse
10045638Heal29_mwound healing/regeneration 29 (mouse)Not determined967124167101124167Mouse
1357610Vtbt8_mvertebral trabecular bone trait 8 (mouse)Not determined968897510102897652Mouse
1301924Bmd10_mbone mineral density 10 (mouse)Not determined968897510102897652Mouse
1301302Pas4_mpulmonary adenoma susceptibility 4 (mouse)Not determined969239845103239920Mouse
10412174Habiir4_mhyperoxic acute lung injury imprinted region 4 (mouse)Not determined96936046598819654Mouse
1301621Hpic1_mhaloperidol-induced catalepsy 1 (mouse)Not determined969546513103546645Mouse
1301573Etohcta8_methanol conditioned taste aversion 8 (mouse)Not determined972977005106977152Mouse
10054068El8_mepilepsy 8 (mouse)Not determined972977005106977152Mouse
1301725Lifespan1_mlife span 1 (mouse)Not determined974368177108368325Mouse
1302065El1_mepilepsy 1 (mouse)Not determined975775364114474379Mouse
10054492El7_mepilepsy 7 (mouse)Not determined975775364114474379Mouse
1301869Tbbmd4_mtotal body bone mineral density 4 (mouse)Not determined976117105101528921Mouse
1301407Rapop2_mradiation-induced apoptosis 2 (mouse)Not determined976535936110536130Mouse
1301192Skts6_mskin tumor susceptibility 6 (mouse)Not determined978640645112640755Mouse
10401247Bglu14_mblood glucose level 14 (mouse)Not determined979397810113397888Mouse
1301732Char1_mP. chabaudi malaria resistance QTL 1 (mouse)Not determined981798268115798392Mouse
1300884Sluc11_msusceptibility to lung cancer 11 (mouse)Not determined982910333116910428Mouse
1357461Idd2_minsulin dependent diabetes susceptibility 2 (mouse)Not determined982910333116910428Mouse
10766454Char10_mP. chabaudi malaria resistance QTL 10 (mouse)982910333116910428Mouse
1301487Nociq1_mnociceptive sensitivity inflammatory QTL 1 (mouse)Not determined984528818118528921Mouse
10412180Msam3_mmuscle, skeletal, activity measure 3 (mouse)Not determined985897510108641186Mouse
1300549Bbaa17_mB. burgdorferi-associated arthritis 17 (mouse)Not determined986230401120230530Mouse
1302103Dob2_mdietary obesity 2 (mouse)Not determined986239845120289624Mouse
11251716Siim2_mstress induced immobility 2 (mouse)986748483120748483Mouse
12880422V25Dq6_mvitamin D inactive form serum level QTL 6 (mouse)987800000121800000Mouse
10412242Alpq8_malcohol preference QTL 8 (mouse)Not determined989284925123284925Mouse
1301649Psl1_mpromotion susceptibility QTL 1 (mouse)Not determined989412277123412396Mouse
18182932Metl3_mmetabolite locus 3, N-acetylglutamate (mouse)989563342123563342Mouse
1357657Pymr_mPlasmodium yoelli malaria resistance (mouse)Not determined989977005118938021Mouse
12910770Splic1_mspleen iron content 1 (mouse)991413879124595110Mouse
12910772Lvic6_mliver iron content 6 (mouse)991413879124595110Mouse
12910773Splic3_mspleen iron content 3 (mouse)991413879124595110Mouse
1558767Skmw11_mskeletal muscle weight 11 (mouse)Not determined991641084124595110Mouse
13463474Hbbcq5_mhemoglobin concentration QTL 5 (mouse)991641084124595110Mouse
13463475Hctq7_mhematocrit QTL 7 (mouse)991641084124595110Mouse
13463477Rbc9_mred blood cell count 9 (mouse)991641084124595110Mouse
13463478Mchq18_mmean corpuscular hemoglobin QTL 18 (mouse)991641084124595110Mouse
13463480Mchcq2_mmean corpuscular hemoglobin concentration QTL 2 (mouse)991641084124595110Mouse
12904937Edlmmq9_mextensor digitorum longus muscle mass QTL 9 (mouse)991683173124595110Mouse
12904947Tammq7_mtibialis anterior muscle mass QTL 7 (mouse)991683173124595110Mouse
12904961Gmmq7_mgastrocnemius muscle mass QTL 7 (mouse)991683173124595110Mouse
1302001Bdln5_mbody length 5 (mouse)Not determined993762590124595110Mouse
1301484Bwq6_mbody weight (mouse)Not determined993762590124595110Mouse
14746992Manh67_mmandible shape 67 (mouse)994036768124595110Mouse
11081166Psl5_mpromotion susceptibility QTL 5 (mouse)994981301112872929Mouse


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000190704   ⟹   ENSMUSP00000148097
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl996,486,001 - 96,525,264 (-)Ensembl
RefSeq Acc Id: NM_001370882   ⟹   NP_001357811
RefSeq Status: INFERRED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39996,368,040 - 96,407,317 (-)NCBI
GRCm38996,485,987 - 96,525,264 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006511607   ⟹   XP_006511670
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39996,373,575 - 96,407,546 (-)NCBI
GRCm38996,491,522 - 96,525,493 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006511609   ⟹   XP_006511672
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39996,385,347 - 96,407,546 (-)NCBI
GRCm38996,503,294 - 96,525,493 (-)NCBI
Sequence:
RefSeq Acc Id: XM_011242849   ⟹   XP_011241151
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39996,373,575 - 96,407,642 (-)NCBI
GRCm38996,491,522 - 96,525,852 (-)NCBI
Sequence:
RefSeq Acc Id: XM_011242850   ⟹   XP_011241152
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39996,373,575 - 96,403,317 (-)NCBI
GRCm38996,491,522 - 96,521,264 (-)NCBI
Sequence:
RefSeq Acc Id: XM_030243952   ⟹   XP_030099812
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39996,373,575 - 96,407,643 (-)NCBI
GRCm38996,491,522 - 96,525,852 (-)NCBI
Sequence:
Reference Sequences
RefSeq Acc Id: XP_006511670   ⟸   XM_006511607
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_006511672   ⟸   XM_006511609
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_011241151   ⟸   XM_011242849
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_011241152   ⟸   XM_011242850
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: NP_001357811   ⟸   NM_001370882
RefSeq Acc Id: XP_030099812   ⟸   XM_030243952
- Peptide Label: isoform X1
RefSeq Acc Id: ENSMUSP00000148097   ⟸   ENSMUST00000190704


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000099564 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSMUSP00000148097 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000190704 ENTREZGENE, UniProtKB/TrEMBL
Gene3D-CATH 3.80.10.10 UniProtKB/TrEMBL
InterPro LRR_dom_sf UniProtKB/TrEMBL
MGD MGI:5579435 ENTREZGENE
NCBI Gene Gm28729 ENTREZGENE
PhenoGen Gm28729 PhenoGen
UniProt A0A1B0GSW2_MOUSE UniProtKB/TrEMBL