Gm26973 (predicted gene, 26973) - Rat Genome Database

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Gene: Gm26973 (predicted gene, 26973) Mus musculus
Analyze
Symbol: Gm26973
Name: predicted gene, 26973
RGD ID: 9600353
MGI Page MGI
Description:
Type: ncrna (Ensembl: lncRNA)
RefSeq Status: MODEL
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391256,651,794 - 56,683,371 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1256,582,128 - 56,654,261 (+)EnsemblGRCm39 Ensembl
GRCm381256,537,190 - 56,627,767 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1256,535,343 - 56,607,476 (+)EnsemblGRCm38mm10GRCm38
Celera1257,686,599 - 57,792,425 (+)NCBICelera
Cytogenetic Map12C1NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:24316575  


Genomics

Variants

.
Variants in Gm26973
1212 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:213
Count of miRNA genes:176
Interacting mature miRNAs:183
Transcripts:ENSMUST00000182105, ENSMUST00000182733, ENSMUST00000183231
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1301574Lmblgq5_mlimb length QTL 5 (mouse)Not determined121759644780956883Mouse
12832727Ahrq1_mairway hyperresponsiveness QTL 1 (mouse)125469591082665939Mouse
1558978Cplaq10_mcircadian period of locomotor activity 10 (mouse)Not determined121534102679040364Mouse
1300636Gct2_mgranulosa cell tumorigenesis 2 (mouse)Not determined122916068563160884Mouse
13207568Tcq14_mtotal cholesterol QTL 14 (mouse)121166000197176774Mouse
4141843Moen3_mmodifier of engrailed QTL 3 (mouse)Not determined122980158463801733Mouse
4142234Tmc1m3_mTmc1 modifier 3 (mouse)Not determined12541844077031203Mouse
14747008Mancz10_mmandible centroid size 10 (mouse)122986352263863522Mouse
4142002Tbqt3_mtibia bone quality traits 3 (mouse)Not determined1235285496109936243Mouse
10402492Dipa8_mdrug induced psychomotor activation 8 (mouse)Not determined123493387268934019Mouse
1357749Vtbt13_mvertebral trabecular bone trait 13 (mouse)Not determined125313200287132145Mouse
12904004Opfaq11_mopen field activity QTL 11 (mouse)125315562457276756Mouse
27226753Femd7_mfemur midshaft diameter 7, 10 week (mouse)12955000084146774Mouse
1301989Hdlq18_mHDL QTL 18 (mouse)Not determined122916068563160884Mouse
1300818Bbaa10_mB.burgdorferi-associated arthritis 10 (mouse)Not determined123509100465511019Mouse
1357479Splwt1_mspleen weight 1 (mouse)Not determined124169317590887526Mouse
1357757Lnopy2_mlens opacity 2 (mouse)Not determined125284662686846796Mouse
12903999Opfaq8_mopen field activity QTL 8 (mouse)125490765357870585Mouse


Expression


Sequence


RefSeq Acc Id: ENSMUST00000182105
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1256,584,201 - 56,654,261 (+)Ensembl
GRCm38.p6 Ensembl1256,537,416 - 56,607,476 (+)Ensembl
RefSeq Acc Id: ENSMUST00000182733
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1256,582,128 - 56,654,224 (+)Ensembl
GRCm38.p6 Ensembl1256,535,343 - 56,607,439 (+)Ensembl
RefSeq Acc Id: ENSMUST00000183231
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1256,584,150 - 56,614,168 (+)Ensembl
GRCm38.p6 Ensembl1256,537,365 - 56,567,383 (+)Ensembl
RefSeq Acc Id: XR_004937601
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391256,659,706 - 56,683,371 (+)NCBI
Sequence:
RefSeq Acc Id: XR_004937602
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391256,651,794 - 56,683,371 (+)NCBI
Sequence:
Promoters
RGD ID:15094125
Promoter ID:EPDNEWNC_M2022
Type:multiple initiation site
Name:Gm26973_1
Description:predicted gene, 26973 [Source:MGI Symbol;Acc:MGI:5504088]
SO ACC ID:SO:0000170
Source:EPDNEWNC (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381256,535,297 - 56,535,357EPDNEWNC
RGD ID:15094108
Promoter ID:EPDNEWNC_M2023
Type:single initiation site
Name:Gm26973_2
Description:predicted gene, 26973 [Source:MGI Symbol;Acc:MGI:5504088]
SO ACC ID:SO:0000170
Source:EPDNEWNC (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381256,537,378 - 56,537,438EPDNEWNC

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000098172 Ensembl
MGD MGI:5504088 ENTREZGENE
NCBI Gene Gm26973 ENTREZGENE
PhenoGen Gm26973 PhenoGen