Mir7065 (microRNA 7065) - Rat Genome Database
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Gene: Mir7065 (microRNA 7065) Mus musculus
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Symbol: Mir7065
Name: microRNA 7065
RGD ID: 9591304
MGI Page MGI
Description: microRNAs (miRNAs) are short (20-24 nt) non-coding RNAs that are involved in post-transcriptional regulation of gene expression in multicellular organisms by affecting both the stability and translation of mRNAs. miRNAs are transcribed by RNA polymerase II as part of capped and polyadenylated primary transcripts (pri-miRNAs) that can be either protein-coding or non-coding. The primary transcript is cleaved by the Drosha ribonuclease III enzyme to produce an approximately 70-nt stem-loop precursor miRNA (pre-miRNA), which is further cleaved by the cytoplasmic Dicer ribonuclease to generate the mature miRNA and antisense miRNA star (miRNA*) products. The mature miRNA is incorporated into a RNA-induced silencing complex (RISC), which recognizes target mRNAs through imperfect base pairing with the miRNA and most commonly results in translational inhibition or destabilization of the target mRNA. The RefSeq represents the predicted microRNA stem-loop. [provided by RefSeq, Sep 2009]
Type: ncrna
RefSeq Status: PROVISIONAL
Also known as: Gm27871; mmu-mir-7065
Latest Assembly: GRCm38 - Mouse Genome Assembly GRCm38
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39813,186,072 - 13,186,132 (+)NCBIGRCm39mm39
GRCm38813,136,072 - 13,136,132 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl813,136,072 - 13,136,132 (+)EnsemblGRCm38mm10GRCm38
Celera813,304,096 - 13,304,156 (+)NCBICelera
Cytogenetic Map8A1.1NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:16381832   PMID:22955976  


Genomics


QTLs in Region (GRCm38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
13432571Scvg1_msubcutaneous vessel growth QTL 1 (mouse)8124701082Mouse
11533914Mts5_mmammary tumor susceptibility 5 (mouse)8130397432Mouse
4140978Nilac5_mnicotine induced locomotor activity 5 (mouse)Not determined8131723288Mouse
27226756Femd2_mfemur midshaft diameter 2, 5 week (mouse)8490000034600000Mouse
1357525Pnhdlc3_mplasma non-HDL cholesterol 3 (mouse)Not determined8716249923263799Mouse
1301532Scc8_mcolon tumor susceptibility 8 (mouse)Not determined8716249934642953Mouse
1300906Ap8q_malcohol preference 8 QTL (mouse)Not determined8749417341494326Mouse
1301128Sluc20_msusceptibility to lung cancer 20 (mouse)Not determined8761318541613356Mouse
1301929Eae24_msusceptibility to experimental allergic encephalomyelitis 24 (mouse)Not determined8761318541613356Mouse
10412209Cypr7_mcytokine production 7 (mouse)Not determined8761318541613356Mouse
14697703Stsl1_mSalmonella typhimurium susceptibility locus 1 (mouse)81130000017000000Mouse

miRNA Target Status

Predicted Targets
Summary Value
Count of predictions:22615
Count of gene targets:7968
Count of transcripts:12440
Interacting mature miRNAs:mmu-miR-7065-3p, mmu-miR-7065-5p
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NR_106032 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC133520 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000185110
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl813,136,072 - 13,136,132 (+)Ensembl
RefSeq Acc Id: NR_106032
RefSeq Status: PROVISIONAL
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39813,186,072 - 13,186,132 (+)NCBI
GRCm38813,136,072 - 13,136,132 (+)NCBI
Celera813,304,096 - 13,304,156 (+)NCBI
Sequence:

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000098532 Ensembl, ENTREZGENE
Ensembl Transcript ENSMUST00000185110 ENTREZGENE
MGD MGI:5531253 ENTREZGENE
miRBase MI0022914 ENTREZGENE
NCBI Gene Mir7065 ENTREZGENE
PhenoGen Mir7065 PhenoGen
RNAcentral URS0000759FE9 RNACentral
  URS000075D5D9 RNACentral
  URS000075DC5D RNACentral