MIR217HG (MIR217 host gene) - Rat Genome Database

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Gene: MIR217HG (MIR217 host gene) Homo sapiens
Analyze
Symbol: MIR217HG
Name: MIR217 host gene
RGD ID: 9588827
HGNC Page HGNC:50537
Description:
Type: ncrna (Ensembl: lncRNA)
RefSeq Status: VALIDATED
Previously known as: MIR216AHG; MIR216BHG
Allele / Splice: See ClinVar data
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38255,963,406 - 56,047,326 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl255,963,191 - 56,047,326 (-)EnsemblGRCh38hg38GRCh38
GRCh37256,190,541 - 56,274,461 (-)NCBIGRCh37GRCh37hg19GRCh37
Cytogenetic Map2p16.1NCBI
CHM1_1256,120,475 - 56,204,393 (-)NCBICHM1_1
T2T-CHM13v2.0255,960,291 - 56,044,270 (-)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:16344560   PMID:38013141  


Genomics

Variants

.
Variants in MIR217HG
40 total Variants

Clinical Variants
Name Type Condition(s) Position(s) Clinical significance
GRCh38/hg38 2p16.1(chr2:55570578-60519844)x1 copy number loss See cases [RCV000137092] Chr2:55570578..60519844 [GRCh38]
Chr2:55797714..60746979 [GRCh37]
Chr2:55651218..60600483 [NCBI36]
Chr2:2p16.1		 pathogenic|uncertain significance
GRCh38/hg38 2p16.3-11.2(chr2:47620388-86702722)x3 copy number gain See cases [RCV000137586] Chr2:47620388..86702722 [GRCh38]
Chr2:47847527..86929845 [GRCh37]
Chr2:47701031..86783356 [NCBI36]
Chr2:2p16.3-11.2		 uncertain significance
GRCh38/hg38 2p25.1-11.2(chr2:7495123-87705899)x3 copy number gain See cases [RCV000141494] Chr2:7495123..87705899 [GRCh38]
Chr2:7635254..88005418 [GRCh37]
Chr2:7552705..87786533 [NCBI36]
Chr2:2p25.1-11.2		 benign
GRCh38/hg38 2p22.1-16.1(chr2:40738282-57863821)x3 copy number gain See cases [RCV000052943] Chr2:40738282..57863821 [GRCh38]
Chr2:40965422..58090956 [GRCh37]
Chr2:40818926..57944460 [NCBI36]
Chr2:2p22.1-16.1		 pathogenic
GRCh38/hg38 2p16.1(chr2:55426587-56072649)x3 copy number gain See cases [RCV000052659] Chr2:55426587..56072649 [GRCh38]
Chr2:55653723..56299784 [GRCh37]
Chr2:55507227..56153288 [NCBI36]
Chr2:2p16.1		 uncertain significance
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:133
Count of miRNA genes:129
Interacting mature miRNAs:132
Transcripts:ENST00000446139
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage entire extraembryonic component
High
Medium 1 1 6 1 31
Low 7 312 40 35 4 35 179 5 42 7 30 23 8 162
Below cutoff 516 1014 350 144 146 93 760 246 752 94 478 236 51 218 559 1

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000446139
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl255,963,191 - 56,047,326 (-)Ensembl
RefSeq Acc Id: ENST00000701602
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl255,963,398 - 56,023,260 (-)Ensembl
RefSeq Acc Id: NR_126406
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38255,963,406 - 56,047,326 (-)NCBI
CHM1_1256,120,475 - 56,204,393 (-)NCBI
T2T-CHM13v2.0255,960,291 - 56,044,270 (-)NCBI
Sequence:
Promoters
RGD ID:15095422
Promoter ID:EPDNEWNC_H255
Type:initiation region
Name:MIR217HG_1
Description:MIR217 host gene [Source:HGNC Symbol;Acc:HGNC:50537]
SO ACC ID:SO:0000170
Source:EPDNEWNC (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.; Paired-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh38256,047,336 - 56,047,396EPDNEWNC

Additional Information

Database Acc Id Source(s)
COSMIC MIR217HG COSMIC
Ensembl Genes ENSG00000226702 Ensembl
GTEx ENSG00000226702 GTEx
HGNC ID HGNC:50537 ENTREZGENE
Human Proteome Map MIR217HG Human Proteome Map
NCBI Gene MIR217HG ENTREZGENE
RNAcentral URS00007E3EB3 RNACentral


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2015-02-24 MIR217HG  MIR217 host gene    MIR217 host gene (non-protein coding)  Symbol and/or name change 5135510 APPROVED