BET1P1 (Bet1 golgi vesicular membrane trafficking protein pseudogene 1) - Rat Genome Database

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Pathways
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Gene: BET1P1 (Bet1 golgi vesicular membrane trafficking protein pseudogene 1) Homo sapiens
Analyze
Symbol: BET1P1
Name: Bet1 golgi vesicular membrane trafficking protein pseudogene 1
RGD ID: 9588174
HGNC Page HGNC:51363
Description: INTERACTS WITH benzo[a]pyrene
Type: pseudo (Ensembl: processed_pseudogene)
RefSeq Status: INFERRED
Related Functional Gene: BET1  
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh387150,749,596 - 150,751,538 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl7150,749,736 - 150,750,094 (+)EnsemblGRCh38hg38GRCh38
GRCh377150,446,684 - 150,448,626 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 367150,077,757 - 150,118,770 (+)NCBINCBI36Build 36hg18NCBI36
Celera7145,003,885 - 145,044,861 (+)NCBICelera
Cytogenetic Map7q36.1NCBI
HuRef7144,258,770 - 144,260,712 (+)NCBIHuRef
CHM1_17150,455,069 - 150,457,011 (+)NCBICHM1_1
T2T-CHM13v2.07151,922,504 - 151,924,446 (+)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:12690205  


Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:216
Count of miRNA genes:182
Interacting mature miRNAs:184
Transcripts:ENST00000482276, ENST00000542395
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage entire extraembryonic component
High
Medium 12 3 4 22 6 4 133
Low 1490 1527 914 258 952 181 2244 1091 989 221 696 1106 78 1087 1358 1
Below cutoff 657 1063 527 227 312 156 1349 836 1774 93 422 132 71 99 1030

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000482276
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl7150,749,736 - 150,750,094 (+)Ensembl
Protein Sequences
GenBank Protein EAL24487 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences


Additional Information

Database Acc Id Source(s)
COSMIC BET1P1 COSMIC
Ensembl Genes ENSG00000241134 Ensembl
GTEx ENSG00000241134 GTEx
HGNC ID HGNC:51363 ENTREZGENE
Human Proteome Map BET1P1 Human Proteome Map
NCBI Gene BET1P1 ENTREZGENE