Atp5k-ps2 (ATP synthase, H+ transporting, mitochondrial F1F0 complex, subunit E, pseudogene 2) - Rat Genome Database

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Gene: Atp5k-ps2 (ATP synthase, H+ transporting, mitochondrial F1F0 complex, subunit E, pseudogene 2) Mus musculus
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Symbol: Atp5k-ps2
Name: ATP synthase, H+ transporting, mitochondrial F1F0 complex, subunit E, pseudogene 2
RGD ID: 9587181
MGI Page MGI
Description:
Type: pseudo (Ensembl: processed_pseudogene)
RefSeq Status: INFERRED
Previously known as: Atp5k; Atp5k-rs2; Gm14337; predicted gene 14337
Related Functional Gene: Atp5me  
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm392173,826,213 - 173,826,517 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl2173,826,275 - 173,826,484 (-)EnsemblGRCm39 Ensembl
GRCm382173,984,420 - 173,984,724 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl2173,984,482 - 173,984,691 (-)EnsemblGRCm38mm10GRCm38
MGSCv372173,809,979 - 173,810,192 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv362173,809,979 - 173,810,192 (-)NCBIMGSCv36mm8
Celera2179,948,569 - 179,948,783 (-)NCBICelera
Cytogenetic Map2H4NCBI
cM Map297.72NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:8702853  


Genomics

Variants

.
Variants in Atp5k-ps2
3 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:64
Count of miRNA genes:63
Interacting mature miRNAs:64
Transcripts:ENSMUST00000120437
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
5491196Mobq6_mmultigenic obesity QTL 6 (mouse)Not determined285724269180896594Mouse
1301618Bglu1_mblood glucose level 1 (mouse)Not determined2117942930174324863Mouse
11353826Bdln10_mbody length 10 (mouse)2140441482174441482Mouse
12801461Intim1_mintima modifier 1 (mouse)2142428347176428450Mouse
12801456Intmrm1_mintima/media ratio modifier 1 (mouse)2142428347176428450Mouse
1301783Bhr1_mbronchial hyperresponsiveness 1 (mouse)Not determined2142593476178442452Mouse
1300867Lore2_mloss of righting induced by ethanol 2 (mouse)Not determined2144515861180896594Mouse
1302013Tbbmd3_mtotal body bone mineral density 3 (mouse)Not determined2145196949179197085Mouse
1300806Aod4_mautoimmune ovarian dysgenesis 4 (mouse)Not determined2145228719179228841Mouse
1301865Hdlq19_mHDL QTL 19 (mouse)Not determined2145518775179518926Mouse
12790983Bwq12_mbody weight QTL 12 (mouse)2148238204181755017Mouse
4142211Nilac3_mnicotine induced locomotor activity 3 (mouse)Not determined2148664893181755017Mouse
1558917Gct8_mgranulosa cell tumorigenesis 8 (mouse)Not determined2149236907181755017Mouse
1300751Bdt1_mbone density traits 1 (mouse)Not determined2149988902181755017Mouse
1301085Lrnx10_mlearning-contextual 10 (mouse)Not determined2150212221181755017Mouse
11038701Ltpr2e_mLeishmania tropica response 2e (mouse)2150212221181755017Mouse
4142450Lmr16_mleishmaniasis resistance 16 (mouse)Not determined2150212221181755017Mouse
12910520Scgq3_mspontaneous crescentic glomerulonephritis QTL 3 (mouse)2151709273174389124Mouse
1301019Bmd6_mbone mineral density 6 (mouse)Not determined2151778297181755017Mouse
14747002Mancz3_mmandible centroid size 3 (mouse)2152329820181755017Mouse
1300622Cfld1_mcystic fibrosis lung disease 1 (mouse)Not determined2155823920181755017Mouse
1357537Lith12_mlithogenic gene 12 (mouse)Not determined2156196464181755017Mouse
1300688Nidd2k_mNidd2 on KK-A (mouse)Not determined2158078337178442452Mouse
1302003Sluc17_msusceptibility to lung cancer 17 (mouse)Not determined2162433493181755017Mouse
1558991Tailq4_mtail length QTL 4 (mouse)Not determined2162736926178442452Mouse
1357435Epfq2_mepididymal fat pad weight QTL 2 (mouse)Not determined2162736926178442452Mouse
1301677Alcp6_malcohol preference locus 6 (mouse)Not determined2163486407181755017Mouse
1301348Alcp5_malcohol preference locus 5 (mouse)Not determined2163486407181755017Mouse
1300676Prdt2_mprion disease incubation time 2 (mouse)Not determined2164515154181755017Mouse
12738409Lfibq1_mliver fibrosis QTL 1 (mouse)2167716420179207088Mouse
12910811Pwbwq3_mpre-weaning body weight QTL 3 (mouse)2169794802178920791Mouse


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000120437
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl2173,826,275 - 173,826,484 (-)Ensembl
GRCm38.p6 Ensembl2173,984,482 - 173,984,691 (-)Ensembl
RefSeq Acc Id: XR_867088
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm382173,984,478 - 173,984,692 (-)NCBI
RefSeq Acc Id: XR_886509
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
Celera2179,948,569 - 179,948,783 (-)NCBI

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000081700 Ensembl
MGD MGI:107356 ENTREZGENE
NCBI Gene Atp5k-rs2 ENTREZGENE
PhenoGen Atp5k-ps2 PhenoGen


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-04-05 Atp5k-ps2  ATP synthase, H+ transporting, mitochondrial F1F0 complex, subunit E, pseudogene 2  Gm14337  predicted gene 14337  Data merged from RGD:2311740 737654 PROVISIONAL
2014-10-21 Atp5k-ps2  ATP synthase, H+ transporting, mitochondrial F1F0 complex, subunit E, pseudogene 2  Atp5k-rs2  ATP synthase, H+ transporting, mitochondrial F1F0 complex, subunit E, related sequence 2  Symbol and/or name change 5135510 APPROVED