Chchd2l2-ps5 (coiled-coil-helix-coiled-coil-helix domain containing protein 2-like 2, pseudogene 5) - Rat Genome Database

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Gene: Chchd2l2-ps5 (coiled-coil-helix-coiled-coil-helix domain containing protein 2-like 2, pseudogene 5) Rattus norvegicus
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Symbol: Chchd2l2-ps5
Name: coiled-coil-helix-coiled-coil-helix domain containing protein 2-like 2, pseudogene 5
RGD ID: 9466191
Description:
Type: ncrna
RefSeq Status: MODEL
Previously known as: coiled-coil-helix-coiled-coil-helix domain-containing protein 2, mitochondrial-like; LOC103693707; LOC502018; RGD1563728; similar to coiled-coil-helix-coiled-coil-helix domain containing 2
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81554,301,347 - 54,332,319 (+)NCBIGRCr8
mRatBN7.21547,876,004 - 47,896,992 (+)NCBImRatBN7.2mRatBN7.2
Rnor_6.01554,582,982 - 54,608,560 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01558,331,473 - 58,331,979 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41553,338,451 - 53,338,957 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1547,521,640 - 47,547,023 (+)NCBICelera
Cytogenetic Map15p11NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Variants

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Variants in Chchd2l2-ps5
62 total Variants

QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2298549Neuinf12Neuroinflammation QTL 123.5nervous system integrity trait (VT:0010566)spinal cord beta-2 microglobulin mRNA level (CMO:0002125)15155302115Rat
1582251Gluco24Glucose level QTL 243.20.0008blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)15553075650530756Rat
631273Lecl2Lens clarity QTL 20.001lens clarity trait (VT:0001304)age of onset/diagnosis of cataract (CMO:0001584)151059608955596089Rat
2300167Bmd63Bone mineral density QTL 635.90.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)151111114256111142Rat
2300173Bmd62Bone mineral density QTL 6212.80.0001lumbar vertebra mineral mass (VT:0010511)volumetric bone mineral density (CMO:0001553)151111114256111142Rat
2293688Bss29Bone structure and strength QTL 295.310.0001femur morphology trait (VT:0000559)femur midshaft cortical cross-sectional area (CMO:0001663)151111114256111142Rat
2317750Glom26Glomerulus QTL 264.3urine protein amount (VT:0005160)urine protein level (CMO:0000591)151249614165205939Rat
61424Scl1Serum cholesterol level QTL 17.70.001blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)151672552880672115Rat
1331729Rf42Renal function QTL 423.071kidney blood vessel physiology trait (VT:0100012)absolute change in renal blood flow rate (CMO:0001168)151736289773690657Rat
10054130Srcrt8Stress Responsive Cort QTL 82.180.0085blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)152211793367117933Rat
1578646Bmd18Bone mineral density QTL 185.2femur mineral mass (VT:0010011)trabecular volumetric bone mineral density (CMO:0001729)152280624098288169Rat
1578647Bmd17Bone mineral density QTL 174femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)152280624098288169Rat
1578660Bss19Bone structure and strength QTL 194.3femur morphology trait (VT:0000559)bone trabecular cross-sectional area (CMO:0002311)152280624098288169Rat
1582214Stl21Serum triglyceride level QTL 213.10.022blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)152803066582262678Rat
1582227Gluco30Glucose level QTL 303.60.0003blood glucose amount (VT:0000188)absolute change in blood glucose level area under curve (CMO:0002034)152803066582262678Rat
1582228Epfw3Epididymal fat weight QTL 34.10.0002epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)152803066582262678Rat
1582242Gluco28Glucose level QTL 283.30.0008blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)152803066582262678Rat
1582244Bw79Body weight QTL 7940.0002epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)152803066582262678Rat
2293691Bmd37Bone mineral density QTL 376.60.0001femur strength trait (VT:0010010)femur total energy absorbed before break (CMO:0001677)153361105871477291Rat
2293686Bmd36Bone mineral density QTL 367.40.0001femur strength trait (VT:0010010)femoral neck ultimate force (CMO:0001703)153361105871477291Rat
1598828Glom14Glomerulus QTL 142.5kidney glomerulus morphology trait (VT:0005325)index of glomerular damage (CMO:0001135)153405413979054139Rat
7411725Strs7Sensitivity to stroke QTL 73.8cerebrum integrity trait (VT:0010549)percentage of study population developing cerebrovascular lesions during a period of time (CMO:0000932)154028990149308583Rat
1300144Rf23Renal function QTL 233.61renal blood flow trait (VT:2000006)absolute change in renal vascular resistance (CMO:0001900)154063126898288169Rat


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XR_010058200 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAXUCZ010000015 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: XR_010058200
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81554,301,347 - 54,332,319 (+)NCBI

Additional Information

Database Acc Id Source(s)
BioCyc Gene G2FUF-13178 BioCyc
NCBI Gene LOC103693707 ENTREZGENE
PhenoGen Chchd2l2-ps5 PhenoGen


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-06-10 Chchd2l2-ps5  coiled-coil-helix-coiled-coil-helix domain containing protein 2-like 2, pseudogene 5  LOC103693707  coiled-coil-helix-coiled-coil-helix domain-containing protein 2, mitochondrial-like  Symbol and Name Changed 1299863 APPROVED
2015-07-29 LOC103693707  coiled-coil-helix-coiled-coil-helix domain-containing protein 2, mitochondrial-like  RGD1563728  similar to coiled-coil-helix-coiled-coil-helix domain containing 2  Data merged from RGD:1563728 737654 PROVISIONAL
2014-08-25 LOC103693707  coiled-coil-helix-coiled-coil-helix domain-containing protein 2, mitochondrial-like      Symbol and Name status set to provisional 70820 PROVISIONAL
2008-04-30 RGD1563728  similar to coiled-coil-helix-coiled-coil-helix domain containing 2   RGD1563728_predicted  similar to coiled-coil-helix-coiled-coil-helix domain containing 2 (predicted)  'predicted' is removed 2292626 APPROVED
2006-03-07 RGD1563728_predicted  similar to coiled-coil-helix-coiled-coil-helix domain containing 2 (predicted)  LOC502018  similar to coiled-coil-helix-coiled-coil-helix domain containing 2  Symbol and Name status set to approved 1299863 APPROVED
2006-02-09 LOC502018  similar to coiled-coil-helix-coiled-coil-helix domain containing 2      Symbol and Name status set to provisional 70820 PROVISIONAL