Wbp11l1 (WW domain-binding protein 11-like 1) - Rat Genome Database

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Gene: Wbp11l1 (WW domain-binding protein 11-like 1) Rattus norvegicus
Analyze
Symbol: Wbp11l1 (Ensembl: Wbp11)
Name: WW domain-binding protein 11-like 1 (Ensembl:WW domain binding protein 11)
RGD ID: 9435381
Description: Predicted to be involved in RNA processing. Predicted to be located in nucleus.
Type: protein-coding
Previously known as: LOC103689936; WW domain-binding protein 11
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.04170,154,257 - 170,167,724 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl4170,154,227 - 170,186,942 (-)EnsemblRnor6.0rn6Rnor6.0
Cytogenetic Map4q43NCBI


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.

Genomics


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium
Low 3 24 22 22 3 22 66 22 33 3
Below cutoff 11 24 11 15 11 2 4 5 9 7 6 2

Sequence

Nucleotide Sequences
RefSeq Transcripts XM_008763449 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008763450 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSRNOT00000007402   ⟹   ENSRNOP00000007402
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl4169,680,984 - 169,694,443 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000072528   ⟹   ENSRNOP00000065287
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl4169,680,984 - 169,694,443 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000082235   ⟹   ENSRNOP00000069027
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl4169,680,984 - 169,692,255 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000082312   ⟹   ENSRNOP00000070403
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl4169,680,983 - 169,691,058 (-)Ensembl
RefSeq Acc Id: XM_008763449   ⟹   XP_008761671
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.04170,154,257 - 170,167,708 (-)NCBI
Sequence:
RefSeq Acc Id: XM_008763450   ⟹   XP_008761672
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.04170,154,261 - 170,167,724 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_008761671 (Get FASTA)   NCBI Sequence Viewer  
  XP_008761672 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000065287.2
  ENSRNOP00000070403.2
Reference Protein Sequences
RefSeq Acc Id: XP_008761671   ⟸   XM_008763449
- Sequence:
RefSeq Acc Id: XP_008761672   ⟸   XM_008763450
- Sequence:
RefSeq Acc Id: ENSRNOP00000069027   ⟸   ENSRNOT00000082235
RefSeq Acc Id: ENSRNOP00000065287   ⟸   ENSRNOT00000072528
RefSeq Acc Id: ENSRNOP00000007402   ⟸   ENSRNOT00000007402
RefSeq Acc Id: ENSRNOP00000070403   ⟸   ENSRNOT00000082312

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13693472
Promoter ID:EPDNEW_R3987
Type:multiple initiation site
Name:Wbp11l1_1
Description:WW domain-binding protein 11-like 1
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.04170,167,707 - 170,167,767EPDNEW

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSRNOG00000005505 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000072528.2 UniProtKB/TrEMBL
  ENSRNOT00000082312.2 UniProtKB/TrEMBL
InterPro WW_dom-bd_prot_11 UniProtKB/TrEMBL
NCBI Gene LOC103689936 ENTREZGENE
PANTHER PTHR13361 UniProtKB/TrEMBL
  WW DOMAIN-BINDING PROTEIN 11 UniProtKB/TrEMBL
Pfam Wbp11 UniProtKB/TrEMBL
PhenoGen Wbp11l1 PhenoGen
RatGTEx ENSRNOG00000005505 RatGTEx
UniProt A0A0G2JXU2_RAT UniProtKB/TrEMBL
  A0A8L2QW34_RAT UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2014-12-10 Wbp11l1  WW domain-binding protein 11-like 1  LOC103689936  WW domain-binding protein 11  Name and Symbol changed 629549 APPROVED
2014-08-25 LOC103689936  WW domain-binding protein 11      Symbol and Name status set to provisional 70820 PROVISIONAL