LOC103690587 (40S ribosomal protein S25 pseudogene) - Rat Genome Database

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Gene: LOC103690587 (40S ribosomal protein S25 pseudogene) Rattus norvegicus
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Symbol: LOC103690587
Name: 40S ribosomal protein S25 pseudogene
RGD ID: 9384454
Description:
Type: pseudo
RefSeq Status: MODEL
Previously known as: LOC685575; similar to 40S ribosomal protein S25
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr89103,106,016 - 103,106,387 (-)NCBIGRCr8
mRatBN7.2995,658,675 - 95,659,046 (-)NCBImRatBN7.2mRatBN7.2
Rnor_6.09102,774,989 - 102,775,397 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.09102,389,888 - 102,390,259 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4994,490,906 - 94,491,277 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera993,132,001 - 93,132,409 (-)NCBICelera
Cytogenetic Map9q36NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
724544Uae9Urinary albumin excretion QTL 94.5urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)925268044114175309Rat
731164Uae25Urinary albumin excretion QTL 253.50.0001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)925661188100929786Rat
1578760Cm53Cardiac mass QTL 533.30.0001heart mass (VT:0007028)heart wet weight (CMO:0000069)956771635101771635Rat
724515Uae16Urinary albumin excretion QTL 168urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)958163035100929646Rat
1300134Bp185Blood pressure QTL 1853.73arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)961381434104821652Rat
1581580Uae34Urinary albumin excretion QTL 34urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)96207227596470995Rat
1578757Pur6Proteinuria QTL 63.30.005urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)96207227596470995Rat
61385Edpm9Estrogen-dependent pituitary mass QTL 93.430.05pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)963869687108869687Rat
731171Glom6Glomerulus QTL 62.80.0003kidney glomerulus morphology trait (VT:0005325)count of superficial glomeruli not directly contacting the kidney surface (CMO:0001002)964573531109573531Rat
1354626Bvd1Brain ventricular dilatation QTL 13.730.001brain ventricle morphology trait (VT:0000822)hydrocephalus severity score (CMO:0001881)975712843111552878Rat
4889852Pur26Proteinuria QTL 26150.001urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)977813894101597663Rat
7794784Mcs31Mammary carcinoma susceptibility QTL 312.98mammary gland integrity trait (VT:0010552)mammary tumor incidence/prevalence measurement (CMO:0000946)977813894111552878Rat
724547Cm21Cardiac mass QTL 212.7heart mass (VT:0007028)calculated heart weight (CMO:0000073)979271511102910209Rat
1582203Gluco19Glucose level QTL 193.30.001blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)992491589100929786Rat


Expression


Sequence

Nucleotide Sequences
GenBank Nucleotide JAXUCZ010000009 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles


Additional Information

Database Acc Id Source(s)
BioCyc Gene G2FUF-26616 BioCyc
NCBI Gene LOC103690587 ENTREZGENE
PhenoGen LOC103690587 PhenoGen


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2015-07-29 LOC103690587  40S ribosomal protein S25 pseudogene  LOC685575  similar to 40S ribosomal protein S25  Data merged from RGD:1592573 737654 PROVISIONAL
2014-08-25 LOC103690587  40S ribosomal protein S25 pseudogene      Symbol and Name status set to provisional 70820 PROVISIONAL
2006-11-20 LOC685575  similar to 40S ribosomal protein S25      Symbol and Name status set to provisional 70820 PROVISIONAL