 Gene Ontology AnnotationsReferences - uncurated
Genomics
QTLs in Region (Rnor_6.0)
RGD ID | Symbol | Name | LOD | P Value | Trait | Sub Trait | Chr | Start | Stop | Species | 61447 | Tcas1 | Tongue tumor susceptibility QTL 1 | 6.08 | tongue integrity trait (VT:0010553) | squamous cell carcinoma of the tongue maximum tumor diameter (CMO:0001875) | 19 | 1957707 | 46957707 | Rat | 61423 | Cia14 | Collagen induced arthritis QTL 14 | 3 | joint integrity trait (VT:0010548) | joint inflammation composite score (CMO:0000919) | 19 | 11303927 | 47879277 | Rat | 61350 | Bp32 | Blood pressure QTL 32 | 0.012 | arterial blood pressure trait (VT:2000000) | systolic blood pressure (CMO:0000004) | 19 | 24818257 | 62275575 | Rat | 724546 | Kidm3 | Kidney mass QTL 3 | 3.1 | kidney mass (VT:0002707) | calculated kidney weight (CMO:0000160) | 19 | 32994392 | 62275575 | Rat | 724565 | Tcas5 | Tongue tumor susceptibility QTL 5 | 10.04 | tongue integrity trait (VT:0010553) | number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950) | 19 | 5007571 | 43907843 | Rat | 724566 | Uae12 | Urinary albumin excretion QTL 12 | 5 | urine albumin amount (VT:0002871) | urine albumin level (CMO:0000130) | 19 | 2432963 | 62275575 | Rat | 724518 | Uae19 | Urinary albumin excretion QTL 19 | 5.5 | urine albumin amount (VT:0002871) | urine albumin excretion rate (CMO:0000757) | 19 | 8072545 | 47318201 | Rat | 1331737 | Uae29 | Urinary albumin excretion QTL 29 | 5.5 | urine albumin amount (VT:0002871) | urine albumin level (CMO:0000130) | 19 | 6506761 | 60220581 | Rat | 1331788 | Rf45 | Renal function QTL 45 | 2.818 | kidney blood vessel physiology trait (VT:0100012) | absolute change in renal blood flow rate (CMO:0001168) | 19 | 17028003 | 52538299 | Rat | 1358200 | Insglur2 | Insulin/glucose ratio QTL 2 | 4.1 | blood glucose amount (VT:0000188) | serum glucose level (CMO:0000543) | 19 | 37916799 | 60220451 | Rat | 1358200 | Insglur2 | Insulin/glucose ratio QTL 2 | 4.1 | blood glucose amount (VT:0000188) | serum insulin level (CMO:0000358) | 19 | 37916799 | 60220451 | Rat | 1549835 | Tcas7 | Tongue tumor susceptibility QTL 7 | 0.001 | tongue integrity trait (VT:0010553) | squamous cell carcinoma of the head and neck tumor number (CMO:0001876) | 19 | 24455726 | 43907843 | Rat | 1578764 | Stresp19 | Stress response QTL 19 | 3.6 | 0.001 | blood renin amount (VT:0003349) | plasma renin activity level (CMO:0000116) | 19 | 18993982 | 62275575 | Rat | 2298478 | Eau8 | Experimental allergic uveoretinitis QTL 8 | 0.0163 | uvea integrity trait (VT:0010551) | experimental autoimmune uveitis score (CMO:0001504) | 19 | 21407787 | 62275575 | Rat | 2317848 | Alcrsp21 | Alcohol response QTL 21 | 1.899999976158142 | 0.05 | response to alcohol trait (VT:0010489) | duration of loss of righting reflex (CMO:0002289) | 19 | 1044648 | 46044648 | Rat | 7247442 | Uae39 | Urinary albumin excretion QTL 39 | urine albumin amount (VT:0002871) | urine albumin excretion rate (CMO:0000757) | 19 | 2432963 | 47217667 | Rat | 7411549 | Bw130 | Body weight QTL 130 | 5 | 0.001 | body mass (VT:0001259) | body weight gain (CMO:0000420) | 19 | 19177495 | 62275575 | Rat | 8694186 | Bw152 | Body weight QTL 152 | 3.34 | 0.001 | body mass (VT:0001259) | body weight gain (CMO:0000420) | 19 | 3701835 | 48701835 | Rat | 9589102 | Slep13 | Serum leptin concentration QTL 13 | 4.63 | 0.001 | blood leptin amount (VT:0005667) | plasma leptin level (CMO:0000781) | 19 | 3701835 | 48701835 | Rat | | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sequence
Nucleotide SequencesReference Sequences
| RefSeq Acc Id: | XM_008772563 ⟹ XP_008770785 | |||||||||
| RefSeq Status: | ||||||||||
| Type: | CODING | |||||||||
| Position: |
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| Sequence: |
GGGTGTGGGGCGGCTCCGGGGCCGGGGATGGCGGCGGCCGCGGTGGCGGCGGCTCCGGGACGAGhide sequence |
| RefSeq Acc Id: | XM_008772564 ⟹ XP_008770786 | |||||||||
| RefSeq Status: | ||||||||||
| Type: | CODING | |||||||||
| Position: |
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| Sequence: |
CGGGCGCCCGGCTTGGGGGGGGCCGCTGGGTGTGGGGCGGCTCCGGGGCCGGGGATGGCGGCGGhide sequence |
| RefSeq Acc Id: | XM_008774233 ⟹ XP_008772455 | |||||||||
| RefSeq Status: | ||||||||||
| Type: | CODING | |||||||||
| Position: |
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| Sequence: |
GGGTGTGGGGCGGCTCCGGGGCCGGGGATGGCGGCGGCCGCGGTGGCGGCGGCTCCGGGACGAGhide sequence |
| RefSeq Acc Id: | XM_008774234 ⟹ XP_008772456 | |||||||||
| RefSeq Status: | ||||||||||
| Type: | CODING | |||||||||
| Position: |
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|||||||||
| Sequence: |
CGGGCGCCCGGCTTGGGGGGGGCCGCTGGGTGTGGGGCGGCTCCGGGGCCGGGGATGGCGGCGGhide sequence |
Protein Sequences| Protein RefSeqs | XP_008770785 | (Get FASTA) | NCBI Sequence Viewer |
| XP_008770786 | (Get FASTA) | NCBI Sequence Viewer | |
| XP_008772455 | (Get FASTA) | NCBI Sequence Viewer | |
| XP_008772456 | (Get FASTA) | NCBI Sequence Viewer |
Reference Sequences
| RefSeq Acc Id: | XP_008772456 ⟸ XM_008774234 |
| - UniProtKB: | D3ZBC4 (UniProtKB/TrEMBL) |
| - Sequence: |
MKPVHERSQECLPPKKRDLPVTSCSTNHTPSSDASEWSRGVVVAGQSQTGARVSLGGDGTEAIThide sequence |
| RefSeq Acc Id: | XP_008772455 ⟸ XM_008774233 |
| - UniProtKB: | D3ZBC4 (UniProtKB/TrEMBL) |
| - Sequence: |
MKPVHERSQECLPPKKRDLPVTSCSTNHTPSSDASEWSRGVVVAGQSQTGARVSLGGDGTEAIThide sequence |
| RefSeq Acc Id: | XP_008770786 ⟸ XM_008772564 |
| - UniProtKB: | D3ZBC4 (UniProtKB/TrEMBL) |
| - Sequence: |
MKPVHERSQECLPPKKRDLPVTSCSTNHTPSSDASEWSRGVVVAGQSQTGARVSLGGDGTEAIThide sequence |
| RefSeq Acc Id: | XP_008770785 ⟸ XM_008772563 |
| - UniProtKB: | D3ZBC4 (UniProtKB/TrEMBL) |
| - Sequence: |
MKPVHERSQECLPPKKRDLPVTSCSTNHTPSSDASEWSRGVVVAGQSQTGARVSLGGDGTEAIThide sequence |
TranscriptomeAdditional Information
External Database Links| Database | Acc Id | Source(s) |
| AGR Gene | RGD:9319286 | AgrOrtholog |
| Ensembl Genes | ENSRNOG00000038766 | ENTREZGENE, UniProtKB/TrEMBL |
| Ensembl Protein | ENSRNOP00000055994 | ENTREZGENE, UniProtKB/TrEMBL |
| Ensembl Transcript | ENSRNOT00000059225 | ENTREZGENE, UniProtKB/TrEMBL |
| InterPro | Ataxin_AXH_dom | UniProtKB/TrEMBL |
| Ataxin_AXH_dom_sf | UniProtKB/TrEMBL | |
| KEGG Report | rno:103694328 | UniProtKB/TrEMBL |
| NCBI Gene | LOC103694328 | ENTREZGENE |
| Pfam | AXH | UniProtKB/TrEMBL |
| PhenoGen | LOC103694328 | PhenoGen |
| PROSITE | AXH | UniProtKB/TrEMBL |
| SMART | AXH | UniProtKB/TrEMBL |
| Superfamily-SCOP | SSF102031 | UniProtKB/TrEMBL |
| UniGene | Rn.23514 | ENTREZGENE |
| UniProt | D3ZBC4 | ENTREZGENE, UniProtKB/TrEMBL |
Nomenclature History| Date | Current Symbol | Current Name | Previous Symbol | Previous Name | Description | Reference | Status |
|---|---|---|---|---|---|---|---|
| 2014-08-25 | LOC103694328 | alanine and glycine-rich protein-like | Symbol and Name status set to provisional | 70820 | PROVISIONAL |
| More on LOC103694328 | |
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Alliance Gene |
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NCBI Gene |
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Ensembl Gene |
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JBrowse: rn6 |
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NCBI Genome Data Viewer |
| RGD Object Information | |
| RGD ID: | 9319286 |
| Created: | 2014-08-25 |
| Species: | Rattus norvegicus |
| Last Modified: | 2019-04-12 |
| Status: | ACTIVE |
