LOC103694506 (ubiquitin-conjugating enzyme E2 W) - Rat Genome Database

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Gene: LOC103694506 (ubiquitin-conjugating enzyme E2 W) Rattus norvegicus
Analyze
Symbol: LOC103694506
Name: ubiquitin-conjugating enzyme E2 W
RGD ID: 9288456
Description:
Type: protein-coding
RefSeq Status: WITHDRAWN
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.0X119,160,964 - 119,178,031 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 EnsemblX119,160,959 - 119,162,518 (-)EnsemblRnor6.0rn6Rnor6.0
CeleraX111,015,186 - 111,032,530 (-)NCBICelera
Cytogenetic MapXq34NCBI


References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:38
Count of miRNA genes:34
Interacting mature miRNAs:35
Transcripts:ENSRNOT00000073176
Prediction methods:Miranda, Pita, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 3 36 45 29 19 29 2 2 74 35 38 11 2
Low 7 12 12 12 6 9 3 6
Below cutoff

Sequence

Nucleotide Sequences
RefSeq Transcripts XM_008758542 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008773483 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSRNOT00000073176   ⟹   ENSRNOP00000063975
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 EnsemblX119,160,959 - 119,162,518 (-)Ensembl
RefSeq Acc Id: XM_008758542   ⟹   XP_008756764
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
CeleraX111,015,186 - 111,032,530 (-)NCBI
Sequence:
RefSeq Acc Id: XM_008773483   ⟹   XP_008771705
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0X119,160,964 - 119,178,031 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_008756764 (Get FASTA)   NCBI Sequence Viewer  
  XP_008771705 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_008771705   ⟸   XM_008773483
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_008756764   ⟸   XM_008758542
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: ENSRNOP00000063975   ⟸   ENSRNOT00000073176

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-M0R3Q5-F1-model_v2 AlphaFold M0R3Q5 1-146 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13701976
Promoter ID:EPDNEW_R12497
Type:single initiation site
Name:LOC103694506_1
Description:ubiquitin-conjugating enzyme E2 W
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0X119,162,531 - 119,162,591EPDNEW

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSRNOG00000046062 Ensembl
NCBI Gene LOC103694506 ENTREZGENE
PhenoGen LOC103694506 PhenoGen


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2014-08-25 LOC103694506  ubiquitin-conjugating enzyme E2 W      Symbol and Name status set to provisional 70820 PROVISIONAL