Smim2 (small integral membrane protein 2) - Rat Genome Database

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Gene: Smim2 (small integral membrane protein 2) Rattus norvegicus
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Symbol: Smim2
Name: small integral membrane protein 2
RGD ID: 9251176
Description: Orthologous to human SMIM2 (small integral membrane protein 2); INTERACTS WITH aflatoxin B1 (ortholog); bis(2-ethylhexyl) phthalate (ortholog); bisphenol A (ortholog).
Type: protein-coding
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
NCBI Annotation Information: Genome Annotation Status: not in current annotation release
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.01558,917,217 - 58,921,811 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Celera1551,719,892 - 51,724,486 (+)NCBICelera
Cytogenetic Map15 NCBI


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Molecular Function

References

Genomics

Comparative Map Data
Smim2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.01558,917,217 - 58,921,811 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Celera1551,719,892 - 51,724,486 (+)NCBICelera
Cytogenetic Map15 NCBI
SMIM2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381344,143,150 - 44,161,257 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1344,143,150 - 44,161,257 (-)EnsemblGRCh38hg38GRCh38
GRCh371344,717,286 - 44,735,393 (-)NCBIGRCh37GRCh37hg19GRCh37
Cytogenetic Map13q14.11NCBI
HuRef1325,519,019 - 25,537,121 (-)NCBIHuRef
CHM1_11344,684,778 - 44,702,880 (-)NCBICHM1_1
T2T-CHM13v2.01343,362,916 - 43,381,023 (-)NCBIT2T-CHM13v2.0
4930431P22Rik
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391476,997,571 - 76,999,655 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1476,997,571 - 76,999,657 (+)EnsemblGRCm39 Ensembl
GRCm381476,760,131 - 76,762,215 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1476,760,131 - 76,762,217 (+)EnsemblGRCm38mm10GRCm38
Celera1474,241,355 - 74,264,107 (+)NCBICelera
Cytogenetic Map14D3NCBI
Smim2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_0049555182,093,272 - 2,093,669 (-)NCBIChiLan1.0ChiLan1.0
SMIM2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21443,648,794 - 43,661,113 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11334,669,198 - 34,744,909 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01325,319,402 - 25,321,517 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.13198,741,345 - 198,742,522 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl3198,741,658 - 198,759,773 (+)Ensemblpanpan1.1panPan2
SMIM2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1226,741,203 - 6,742,866 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl226,741,504 - 6,757,691 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha226,730,988 - 6,736,190 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0226,859,939 - 6,865,151 (+)NCBIROS_Cfam_1.0
UMICH_Zoey_3.1226,641,979 - 6,647,180 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0226,703,878 - 6,709,079 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0226,710,963 - 6,716,164 (+)NCBIUU_Cfam_GSD_1.0
Smim2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404945154,530,333 - 154,539,257 (-)NCBIHiC_Itri_2
SpeTri2.0NW_004936791450,901 - 459,825 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SMIM2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1122,903,261 - 22,920,181 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11122,895,849 - 22,906,251 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21123,335,616 - 23,343,126 (+)NCBISscrofa10.2Sscrofa10.2susScr3
SMIM2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1322,258,218 - 22,361,732 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366605721,861,793 - 21,864,106 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Smim2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462474810,851,205 - 10,851,449 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_008770597 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008770935 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: XM_008770597   ⟹   XP_008768819
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Celera1551,719,892 - 51,724,486 (+)NCBI
RefSeq Acc Id: XM_008770935   ⟹   XP_008769157
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01558,917,217 - 58,921,811 (+)NCBI

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:9251176 AgrOrtholog
NCBI Gene Smim2 ENTREZGENE
PhenoGen Smim2 PhenoGen


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2014-08-25 Smim2  small integral membrane protein 2      Symbol and Name status set to provisional 70820 PROVISIONAL