LOC103693662 (ATP synthase F(0) complex subunit C3, mitochondrial pseudogene) - Rat Genome Database

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Gene: LOC103693662 (ATP synthase F(0) complex subunit C3, mitochondrial pseudogene) Rattus norvegicus
Analyze
No known orthologs.
Symbol: LOC103693662
Name: ATP synthase F(0) complex subunit C3, mitochondrial pseudogene
RGD ID: 9229390
Description: Predicted to enable proton transmembrane transporter activity. Predicted to be involved in proton motive force-driven ATP synthesis and proton transmembrane transport. Predicted to be located in mitochondrion. Predicted to be part of proton-transporting ATP synthase complex, coupling factor F(o).
Type: pseudo (Ensembl: protein-coding)
RefSeq Status: MODEL
Previously known as: ATP synthase, H+ transporting, mitochondrial F0 complex, subunit c (subunit 9), isoform 3; ATP synthase, H+ transporting, mitochondrial Fo complex, subunit c (subunit 9), isoform 3; ENSRNOG00000063996; LOC100362737
RGD Orthologs
Alliance Genes
More Info homologs ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81539,605,308 - 39,606,818 (+)NCBIGRCr8
mRatBN7.21535,429,231 - 35,430,741 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1535,430,321 - 35,430,686 (+)EnsemblmRatBN7.2 Ensembl
mRatBN7.2 Ensembl1535,430,321 - 35,430,686 (+)NCBImRatBN7.2 Ensembl
Rnor_6.01541,589,434 - 41,591,326 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
RGSC_v3.41540,404,220 - 40,405,730 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1535,127,750 - 35,129,642 (+)NCBICelera
Cytogenetic Map15p12NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

Genomics

Variants

.
Variants in LOC103693662
4 total Variants

QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
731170Pur3Proteinuria QTL 32.30.0005urine protein amount (VT:0005160)urine protein excretion rate (CMO:0000759)15141686771Rat
1641887Alcrsp14Alcohol response QTL 14response to alcohol trait (VT:0010489)brain neurotensin receptor 1 density (CMO:0002068)15142356671Rat
2298549Neuinf12Neuroinflammation QTL 123.5nervous system integrity trait (VT:0010566)spinal cord beta-2 microglobulin mRNA level (CMO:0002125)15155302115Rat
10401805Kidm51Kidney mass QTL 51kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)1530632945306329Rat
738017Hcas7Hepatocarcinoma susceptibility QTL 72.91liver integrity trait (VT:0010547)liver nonremodeling tumorous lesion volume to total liver volume ratio (CMO:0001464)15226636846921453Rat
1582251Gluco24Glucose level QTL 243.20.0008blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)15553075650530756Rat
631273Lecl2Lens clarity QTL 20.001lens clarity trait (VT:0001304)age of onset/diagnosis of cataract (CMO:0001584)151059608955596089Rat
2300167Bmd63Bone mineral density QTL 635.90.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)151111114256111142Rat
2300173Bmd62Bone mineral density QTL 6212.80.0001lumbar vertebra mineral mass (VT:0010511)volumetric bone mineral density (CMO:0001553)151111114256111142Rat
2293688Bss29Bone structure and strength QTL 295.310.0001femur morphology trait (VT:0000559)femur midshaft cortical cross-sectional area (CMO:0001663)151111114256111142Rat
2317750Glom26Glomerulus QTL 264.3urine protein amount (VT:0005160)urine protein level (CMO:0000591)151249614165205939Rat
61424Scl1Serum cholesterol level QTL 17.70.001blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)151672552880672115Rat
1331729Rf42Renal function QTL 423.071kidney blood vessel physiology trait (VT:0100012)absolute change in renal blood flow rate (CMO:0001168)151736289773690657Rat
2324620Coatc3Coat color QTL 3coat/hair pigmentation trait (VT:0010463)pigmented coat/hair area to total coat/hair area ratio (CMO:0001810)151985656646187442Rat
10054130Srcrt8Stress Responsive Cort QTL 82.180.0085blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)152211793367117933Rat
1578646Bmd18Bone mineral density QTL 185.2femur mineral mass (VT:0010011)trabecular volumetric bone mineral density (CMO:0001729)152280624098288169Rat
1578647Bmd17Bone mineral density QTL 174femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)152280624098288169Rat
1578660Bss19Bone structure and strength QTL 194.3femur morphology trait (VT:0000559)bone trabecular cross-sectional area (CMO:0002311)152280624098288169Rat
1582214Stl21Serum triglyceride level QTL 213.10.022blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)152803066582262678Rat
1582227Gluco30Glucose level QTL 303.60.0003blood glucose amount (VT:0000188)absolute change in blood glucose level area under curve (CMO:0002034)152803066582262678Rat
1582228Epfw3Epididymal fat weight QTL 34.10.0002epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)152803066582262678Rat
1582242Gluco28Glucose level QTL 283.30.0008blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)152803066582262678Rat
1582244Bw79Body weight QTL 7940.0002epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)152803066582262678Rat
2293691Bmd37Bone mineral density QTL 376.60.0001femur strength trait (VT:0010010)femur total energy absorbed before break (CMO:0001677)153361105871477291Rat
2293686Bmd36Bone mineral density QTL 367.40.0001femur strength trait (VT:0010010)femoral neck ultimate force (CMO:0001703)153361105871477291Rat
1598828Glom14Glomerulus QTL 142.5kidney glomerulus morphology trait (VT:0005325)index of glomerular damage (CMO:0001135)153405413979054139Rat


Expression


Sequence

Nucleotide Sequences
GenBank Nucleotide JAXUCZ010000015 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSRNOT00000115212   ⟹   ENSRNOP00000081928
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1535,430,321 - 35,430,686 (+)Ensembl
Protein Sequences
Ensembl Protein ENSRNOP00000081928.1
RefSeq Acc Id: ENSRNOP00000081928   ⟸   ENSRNOT00000115212

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
BioCyc Gene G2FUF-13511 BioCyc
Ensembl Genes ENSRNOG00000063996 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000115212.1 UniProtKB/TrEMBL
Gene3D-CATH 1.20.20.10 UniProtKB/TrEMBL
InterPro ATP_synth_F0_csu UniProtKB/TrEMBL
  ATP_synth_F0_csu_sf UniProtKB/TrEMBL
NCBI Gene LOC103693662 ENTREZGENE
PANTHER ATP SYNTHASE F(0) COMPLEX SUBUNIT C3, MITOCHONDRIAL UniProtKB/TrEMBL
  PTHR10031 UniProtKB/TrEMBL
PhenoGen LOC103693662 PhenoGen
RatGTEx ENSRNOG00000063996 RatGTEx
UniProt A0A8I5ZTY6_RAT UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-06-02 LOC103693662  ATP synthase F(0) complex subunit C3, mitochondrial pseudogene  ENSRNOG00000063996    Data merged from RGD:150345437 737654 PROVISIONAL
2021-08-31 ENSRNOG00000063996        Symbol and Name status set to provisional 45752 PROVISIONAL
2015-07-29 LOC103693662  ATP synthase F(0) complex subunit C3, mitochondrial pseudogene  LOC100362737  ATP synthase, H+ transporting, mitochondrial Fo complex, subunit c (subunit 9), isoform 3  Data merged from RGD:2324121 737654 PROVISIONAL
2014-08-25 LOC103693662  ATP synthase F(0) complex subunit C3, mitochondrial pseudogene      Symbol and Name status set to provisional 70820 PROVISIONAL
2011-12-01 LOC100362737  ATP synthase, H+ transporting, mitochondrial Fo complex, subunit c (subunit 9), isoform 3  LOC100362737  ATP synthase, H+ transporting, mitochondrial F0 complex, subunit c (subunit 9), isoform 3  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2010-05-06 LOC100362737  ATP synthase, H+ transporting, mitochondrial F0 complex, subunit c (subunit 9), isoform 3      Symbol and Name status set to provisional 70820 PROVISIONAL