Plekhf2-ps1 (pleckstrin homology and FYVE domain containing 2, pseudogene 1) - Rat Genome Database

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Gene: Plekhf2-ps1 (pleckstrin homology and FYVE domain containing 2, pseudogene 1) Rattus norvegicus
Analyze
Symbol: Plekhf2-ps1
Name: pleckstrin homology and FYVE domain containing 2, pseudogene 1
RGD ID: 9220235
Description:
Type: pseudo
RefSeq Status: MODEL
Previously known as: LOC103693017; LOC690677; pleckstrin homology domain-containing family F member 2-like; similar to phafin 2
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8825,915,112 - 25,915,842 (-)NCBIGRCr8
mRatBN7.2817,638,841 - 17,639,571 (-)NCBImRatBN7.2mRatBN7.2
Rnor_6.0819,914,664 - 19,916,044 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.0819,993,345 - 19,994,075 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4818,093,818 - 18,094,548 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera819,050,948 - 19,052,328 (-)NCBICelera
Cytogenetic Map8q13NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Variants

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Variants in Plekhf2-ps1
1 total Variants

QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
9590084Insglur5Insulin/glucose ratio QTL 518.540.001blood insulin amount (VT:0001560)calculated plasma insulin level (CMO:0002170)8124597739Rat
2317882Alcrsp24Alcohol response QTL 243.20.05response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)8125902202Rat
12880023Bw184Body weight QTL 1840.001body mass (VT:0001259)body weight (CMO:0000012)8209764047097640Rat
12880025Cm102Cardiac mass QTL 1020.044heart mass (VT:0007028)heart wet weight to body weight ratio (CMO:0002408)8209764047097640Rat
12880028Cm103Cardiac mass QTL 1030.02heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)8209764047097640Rat
12880044Am9Aortic mass QTL 90.007aorta mass (VT:0002845)aorta weight to aorta length to body weight ratio (CMO:0002722)8209764047097640Rat
2317032Ginf2Gastrointestinal inflammation QTL 23.210.005liver integrity trait (VT:0010547)liver granuloma severity score (CMO:0002157)8470581049705810Rat
2317036Livw3Liver weight QTL 32.430.01liver mass (VT:0003402)liver weight to body weight ratio (CMO:0000633)8470581049705810Rat
2317048Ginf1Gastrointestinal inflammation QTL 13.520.005cecum mucosa thickness (VT:0010234)enterocolitis severity score (CMO:0002138)8470581049705810Rat
2301416Bp315Blood pressure QTL 3150.008arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)8767057852670578Rat
1354595Despr4Despair related QTL 42.160.0036locomotor behavior trait (VT:0001392)amount of time spent in voluntary immobility (CMO:0001043)8768895552688955Rat
1354627Despr14Despair related QTL 140.0056locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)8768895552688955Rat
1581557Eae16Experimental allergic encephalomyelitis QTL 163.8nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)88462195110921472Rat
2317030Wbc5White blood cell count QTL 53.210.005leukocyte quantity (VT:0000217)white blood cell count (CMO:0000027)8873663553736635Rat
2317051Aia18Adjuvant induced arthritis QTL 182.42joint integrity trait (VT:0010548)left rear ankle joint diameter (CMO:0002149)8873663553736635Rat
1598824Memor4Memory QTL 42.5exploratory behavior trait (VT:0010471)total horizontal distance resulting from voluntary locomotion in an experimental apparatus (CMO:0001443)8971222053356647Rat
1357398Slep3Serum leptin concentration QTL 33.43blood leptin amount (VT:0005667)serum leptin level (CMO:0000780)8971246341866876Rat
2302367Slep5Serum leptin concentration QTL 53.43blood leptin amount (VT:0005667)serum leptin level (CMO:0000780)8971246341866876Rat
631650Stl6Serum triglyceride level QTL 640.0019blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)810378157112202585Rat
1558646Swd5Spike wave discharge measurement QTL 53.450.00036brain electrophysiology trait (VT:0010557)brain spike-and-wave discharge frequency (CMO:0001742)81490675159906751Rat
61373Mcs4Mammary carcinoma susceptibility QTL 41.1mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)81629044461290444Rat


Expression


Sequence

Nucleotide Sequences
GenBank Nucleotide JAXUCZ010000008 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles


Additional Information

Database Acc Id Source(s)
BioCyc Gene G2FUF-31528 BioCyc
NCBI Gene LOC103693017 ENTREZGENE
PhenoGen Plekhf2-ps1 PhenoGen


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-06-10 Plekhf2-ps1  pleckstrin homology and FYVE domain containing 2, pseudogene 1  LOC103693017  pleckstrin homology domain-containing family F member 2-like  Symbol and Name Changed 1299863 APPROVED
2015-07-29 LOC103693017  pleckstrin homology domain-containing family F member 2-like  LOC690677  similar to phafin 2  Data merged from RGD:1593395 737654 PROVISIONAL
2014-08-25 LOC103693017  pleckstrin homology domain-containing family F member 2-like      Symbol and Name status set to provisional 70820 PROVISIONAL
2008-01-09 LOC690677  similar to phafin 2  LOC686869  similar to phafin 2  Data merged from RGD:1592485 1643240 APPROVED
2006-11-20 LOC690677  similar to phafin 2      Symbol and Name status set to provisional 70820 PROVISIONAL
2006-11-20 LOC686869  similar to phafin 2      Symbol and Name status set to provisional 70820 PROVISIONAL