Gjb5 (gap junction protein beta 5) - Rat Genome Database

Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Gene: Gjb5 (gap junction protein beta 5) Chinchilla lanigera
Analyze
Symbol: Gjb5
Name: gap junction protein beta 5
RGD ID: 9067495
Description: INVOLVED IN epididymis development (ortholog); labyrinthine layer morphogenesis (ortholog); spongiotrophoblast differentiation (ortholog); ASSOCIATED WITH Charcot-Marie-Tooth disease dominant intermediate C (ortholog); genetic disease (ortholog); Skin Neoplasms (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: gap junction protein, beta 5, 31.1kDa
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495545212,867,200 - 12,870,427 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495545212,867,200 - 12,870,427 (+)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Gjb5
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495545212,867,200 - 12,870,427 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495545212,867,200 - 12,870,427 (+)NCBIChiLan1.0ChiLan1.0
GJB5
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38134,755,047 - 34,758,512 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl134,755,047 - 34,758,512 (+)EnsemblGRCh38hg38GRCh38
GRCh37135,220,648 - 35,224,113 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36134,993,308 - 34,996,699 (+)NCBINCBI36Build 36hg18NCBI36
Build 34134,889,813 - 34,893,205NCBI
Celera133,494,445 - 33,497,836 (+)NCBICelera
Cytogenetic Map1p34.3NCBI
HuRef133,338,163 - 33,341,628 (+)NCBIHuRef
CHM1_1135,336,342 - 35,339,807 (+)NCBICHM1_1
T2T-CHM13v2.0134,617,685 - 34,621,150 (+)NCBIT2T-CHM13v2.0
Gjb5
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm394127,248,600 - 127,251,957 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl4127,248,602 - 127,251,974 (-)EnsemblGRCm39 Ensembl
GRCm384127,354,809 - 127,358,164 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl4127,354,809 - 127,358,181 (-)EnsemblGRCm38mm10GRCm38
MGSCv374127,032,053 - 127,035,408 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv364126,857,113 - 126,860,468 (-)NCBIMGSCv36mm8
Celera4125,689,190 - 125,692,545 (-)NCBICelera
Cytogenetic Map4D2.2NCBI
cM Map461.51NCBI
Gjb5
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr85144,965,133 - 144,968,051 (-)NCBIGRCr8
mRatBN7.25139,680,670 - 139,683,588 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl5139,680,671 - 139,683,583 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx5142,376,076 - 142,376,891 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.05144,146,067 - 144,146,882 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.05144,146,880 - 144,147,695 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.05145,422,034 - 145,440,558 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl5145,422,357 - 145,423,172 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.05149,190,009 - 149,193,107 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.45146,802,849 - 146,803,664 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.15146,812,887 - 146,813,703 (-)NCBI
Celera5138,175,690 - 138,176,505 (-)NCBICelera
Cytogenetic Map5q36NCBI
GJB5
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21192,087,232 - 192,090,729 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11191,208,376 - 191,211,883 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0134,022,109 - 34,025,606 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1135,203,658 - 35,207,134 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl135,205,953 - 35,206,774 (+)Ensemblpanpan1.1panPan2
GJB5
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1157,196,720 - 7,199,652 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha157,436,219 - 7,439,149 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0157,342,877 - 7,345,807 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl157,343,120 - 7,343,941 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1157,205,189 - 7,208,117 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0157,253,201 - 7,256,124 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0157,267,421 - 7,270,351 (-)NCBIUU_Cfam_GSD_1.0
Gjb5
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505851,577,747 - 51,581,737 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647417,405,000 - 17,405,809 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647417,402,804 - 17,406,080 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
GJB5
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl691,002,163 - 91,002,984 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1690,999,514 - 91,003,301 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2678,819,323 - 78,823,093 (-)NCBISscrofa10.2Sscrofa10.2susScr3
GJB5
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12098,128,901 - 98,132,640 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2098,129,262 - 98,130,083 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603318,708,932 - 18,712,511 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Gjb5
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462476417,808,161 - 17,811,372 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462476417,807,943 - 17,811,404 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


RefSeq Acc Id: ENSCLAT00000012556   ⟹   ENSCLAP00000012412
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_00495545212,867,200 - 12,870,427 (+)Ensembl
RefSeq Acc Id: XM_005395123   ⟹   XP_005395180
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495545212,867,200 - 12,870,427 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005395180 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCLAP00000012412
  ENSCLAP00000012412.1
RefSeq Acc Id: XP_005395180   ⟸   XM_005395123
- UniProtKB: A0A8C2VGN2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSCLAP00000012412   ⟸   ENSCLAT00000012556

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000008575 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000012556 ENTREZGENE
  ENSCLAT00000012556.1 UniProtKB/TrEMBL
Gene3D-CATH 1.20.1440.80 UniProtKB/TrEMBL
InterPro Connexin UniProtKB/TrEMBL
  Connexin311 UniProtKB/TrEMBL
  Connexin_CCC UniProtKB/TrEMBL
  Connexin_CS UniProtKB/TrEMBL
  Connexin_N UniProtKB/TrEMBL
  Connexin_N_sf UniProtKB/TrEMBL
NCBI Gene Gjb5 ENTREZGENE
PANTHER GAP JUNCTION BETA-5 PROTEIN UniProtKB/TrEMBL
  PTHR11984 UniProtKB/TrEMBL
Pfam Connexin UniProtKB/TrEMBL
PRINTS CONNEXIN UniProtKB/TrEMBL
  CONNEXINB4 UniProtKB/TrEMBL
PROSITE CONNEXINS_1 UniProtKB/TrEMBL
  CONNEXINS_2 UniProtKB/TrEMBL
SMART CNX UniProtKB/TrEMBL
  Connexin_CCC UniProtKB/TrEMBL
UniProt A0A8C2VGN2 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-08-16 Gjb5  gap junction protein beta 5    gap junction protein, beta 5, 31.1kDa  Symbol and/or name change 5135510 APPROVED