Myo5a (myosin VA) - Rat Genome Database

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Gene: Myo5a (myosin VA) Chinchilla lanigera
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Symbol: Myo5a
Name: myosin VA
RGD ID: 9067144
Description: ENCODES a protein that exhibits actin binding (ortholog); ATP binding (ortholog); ATP-dependent protein binding (ortholog); INVOLVED IN actin filament-based movement (ortholog); axo-dendritic protein transport (ortholog); cellular response to insulin stimulus (ortholog); PARTICIPATES IN insulin responsive facilitative sugar transporter mediated glucose transport pathway; ASSOCIATED WITH Bloom syndrome (ortholog); colon cancer (ortholog); dystonia (ortholog); FOUND IN actin filament (ortholog); actomyosin (ortholog); actomyosin, myosin complex part (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Also known as: myosin VA (heavy chain 12, myoxin); unconventional myosin-Va
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554092,428,815 - 2,530,012 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554092,409,503 - 2,530,539 (+)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process
actin filament-based movement  (ISO)
axo-dendritic protein transport  (ISO)
cellular response to insulin stimulus  (ISO)
chemical synaptic transmission  (ISO)
developmental pigmentation  (ISO)
dopamine metabolic process  (ISO)
endoplasmic reticulum localization  (ISO)
establishment of endoplasmic reticulum localization to postsynapse  (ISO)
exocytosis  (ISO)
hair follicle maturation  (ISO)
insulin secretion  (ISO)
locomotion involved in locomotory behavior  (ISO)
long-chain fatty acid biosynthetic process  (ISO)
macroautophagy  (ISO)
melanin biosynthetic process  (ISO)
melanin metabolic process  (ISO)
melanocyte differentiation  (ISO)
melanosome localization  (ISO)
melanosome transport  (ISO)
myelination  (ISO)
negative regulation of dopamine secretion  (ISO)
negative regulation of synaptic transmission, glutamatergic  (ISO)
neuromuscular process controlling balance  (ISO)
odontogenesis  (ISO)
pigmentation  (ISO)
positive regulation of cellular response to insulin stimulus  (ISO)
positive regulation of cytochrome-c oxidase activity  (ISO)
positive regulation of protein localization to plasma membrane  (ISO)
positive regulation of vascular associated smooth muscle cell migration  (ISO)
post-Golgi vesicle-mediated transport  (ISO)
protein localization to plasma membrane  (ISO)
protein-containing complex assembly  (ISO)
reactive gliosis  (ISO)
regulation of exocytosis  (ISO)
regulation of Golgi organization  (ISO)
regulation of inositol 1,4,5-trisphosphate-sensitive calcium-release channel activity  (ISO)
regulation of postsynaptic cytosolic calcium ion concentration  (ISO)
secretory granule localization  (ISO)
synapse organization  (ISO)
vesicle transport along actin filament  (ISO)
vesicle-mediated transport  (ISO)
visual perception  (ISO)

Molecular Pathway Annotations     Click to see Annotation Detail View
References


Genomics

Comparative Map Data
Myo5a
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554092,428,815 - 2,530,012 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554092,409,503 - 2,530,539 (+)NCBIChiLan1.0ChiLan1.0
MYO5A
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl1552,307,283 - 52,529,050 (-)EnsemblGRCh38hg38GRCh38
GRCh381552,307,283 - 52,529,050 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh371552,599,480 - 52,821,247 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361550,386,770 - 50,608,539 (-)NCBINCBI36hg18NCBI36
Build 341550,392,601 - 50,608,539NCBI
Celera1529,494,500 - 29,716,298 (-)NCBI
Cytogenetic Map15q21.2NCBI
HuRef1529,430,131 - 29,652,241 (-)NCBIHuRef
CHM1_11552,717,420 - 52,939,199 (-)NCBICHM1_1
Myo5a
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39974,975,183 - 75,130,970 (+)NCBIGRCm39mm39
GRCm39 Ensembl974,978,297 - 75,130,970 (+)Ensembl
GRCm38975,069,799 - 75,223,688 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl975,071,015 - 75,223,688 (+)EnsemblGRCm38mm10GRCm38
MGSCv37974,919,013 - 75,071,495 (+)NCBIGRCm37mm9NCBIm37
MGSCv36974,858,205 - 75,005,381 (+)NCBImm8
Celera972,225,104 - 72,382,491 (+)NCBICelera
Cytogenetic Map9DNCBI
cM Map942.26NCBI
Myo5a
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2875,811,985 - 75,980,049 (+)NCBImRatBN7.2
mRatBN7.2 Ensembl875,812,412 - 75,975,918 (+)Ensembl
Rnor_6.0882,038,966 - 82,156,507 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl882,037,977 - 82,156,617 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0881,641,953 - 81,759,995 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4879,909,224 - 80,027,290 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1879,928,282 - 80,046,341 (+)NCBI
Celera875,604,281 - 75,764,672 (+)NCBICelera
Cytogenetic Map8q24NCBI
MYO5A
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11549,572,084 - 49,699,507 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1549,578,491 - 49,704,319 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01531,246,192 - 31,470,040 (-)NCBIMhudiblu_PPA_v0panPan3
MYO5A
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13017,990,521 - 18,122,160 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3017,888,419 - 18,213,061 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3017,917,091 - 18,108,854 (-)NCBI
ROS_Cfam_1.03018,136,193 - 18,328,524 (-)NCBI
UMICH_Zoey_3.13018,055,372 - 18,247,165 (-)NCBI
UNSW_CanFamBas_1.03018,173,117 - 18,365,153 (-)NCBI
UU_Cfam_GSD_1.03018,280,846 - 18,470,667 (-)NCBI
Myo5a
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440864096,257,769 - 96,409,323 (-)NCBI
SpeTri2.0NW_00493647114,105,832 - 14,257,386 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
MYO5A
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1119,134,313 - 119,394,725 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11119,165,751 - 119,398,591 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21132,234,339 - 132,481,044 (+)NCBISscrofa10.2Sscrofa10.2susScr3
MYO5A
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12630,865,947 - 31,085,184 (+)NCBI
Vero_WHO_p1.0NW_023666048110,145,270 - 110,364,249 (-)NCBI
Myo5a
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247318,114,557 - 8,280,586 (+)NCBI


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSCLAT00000011818   ⟹   ENSCLAP00000011680
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049554092,428,815 - 2,530,012 (+)Ensembl
RefSeq Acc Id: ENSCLAT00000011819   ⟹   ENSCLAP00000011681
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049554092,428,815 - 2,530,012 (+)Ensembl
RefSeq Acc Id: ENSCLAT00000011820   ⟹   ENSCLAP00000011682
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049554092,429,095 - 2,530,012 (+)Ensembl
RefSeq Acc Id: XM_013510278   ⟹   XP_013365732
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554092,409,503 - 2,530,539 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013510279   ⟹   XP_013365733
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554092,409,503 - 2,530,539 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013510280   ⟹   XP_013365734
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554092,409,503 - 2,530,539 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013510281   ⟹   XP_013365735
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554092,432,259 - 2,530,539 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_013365732 (Get FASTA)   NCBI Sequence Viewer  
  XP_013365733 (Get FASTA)   NCBI Sequence Viewer  
  XP_013365734 (Get FASTA)   NCBI Sequence Viewer  
  XP_013365735 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_013365732   ⟸   XM_013510278
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_013365733   ⟸   XM_013510279
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_013365734   ⟸   XM_013510280
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_013365735   ⟸   XM_013510281
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: ENSCLAP00000011681   ⟸   ENSCLAT00000011819
RefSeq Acc Id: ENSCLAP00000011680   ⟸   ENSCLAT00000011818
RefSeq Acc Id: ENSCLAP00000011682   ⟸   ENSCLAT00000011820


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000008057 Ensembl, ENTREZGENE
Ensembl Protein ENSCLAP00000011681 ENTREZGENE
  ENSCLAP00000011682 ENTREZGENE
Ensembl Transcript ENSCLAT00000011819 ENTREZGENE
  ENSCLAT00000011820 ENTREZGENE
NCBI Gene Myo5a ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-08-16 Myo5a  myosin VA    myosin VA (heavy chain 12, myoxin)  Symbol and/or name change 5135510 APPROVED