Calhm6 (calcium homeostasis modulator family member 6) - Rat Genome Database

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Gene: Calhm6 (calcium homeostasis modulator family member 6) Chinchilla lanigera
Analyze
Symbol: Calhm6
Name: calcium homeostasis modulator family member 6
RGD ID: 9066441
Description: ASSOCIATED WITH body dysmorphic disorder (ortholog); congenital disorder of glycosylation Iaa (ortholog); epilepsy (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: Fam26f; family with sequence similarity 26 member F; family with sequence similarity 26, member F
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_004955526319,920 - 321,985 (-)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
Calhm6
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_004955526319,920 - 321,985 (-)NCBIChiLan1.0ChiLan1.0
CALHM6
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh386116,461,375 - 116,463,771 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl6116,461,370 - 116,463,771 (+)EnsemblGRCh38hg38GRCh38
GRCh376116,782,538 - 116,784,934 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 366116,889,249 - 116,891,627 (+)NCBINCBI36Build 36hg18NCBI36
Celera6117,525,623 - 117,528,003 (+)NCBICelera
Cytogenetic Map6q22.1NCBI
HuRef6114,362,389 - 114,364,792 (+)NCBIHuRef
CHM1_16117,046,176 - 117,048,577 (+)NCBICHM1_1
T2T-CHM13v2.06117,645,096 - 117,647,492 (+)NCBIT2T-CHM13v2.0
Calhm6
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391034,002,063 - 34,003,968 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1034,002,063 - 34,003,980 (-)EnsemblGRCm39 Ensembl
GRCm381034,126,067 - 34,127,972 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1034,126,067 - 34,127,984 (-)EnsemblGRCm38mm10GRCm38
MGSCv371033,845,873 - 33,847,778 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361033,815,485 - 33,817,388 (-)NCBIMGSCv36mm8
Celera1035,035,780 - 35,037,686 (-)NCBICelera
Cytogenetic Map10B1NCBI
cM Map1018.85NCBI
Calhm6
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82026,638,721 - 26,640,466 (-)NCBIGRCr8
mRatBN7.22026,095,591 - 26,097,336 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2026,095,592 - 26,097,278 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx2027,097,854 - 27,099,524 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.02026,484,199 - 26,485,869 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.02027,232,378 - 27,234,048 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.02027,681,138 - 27,683,580 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2027,681,036 - 27,682,861 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02029,505,895 - 29,507,565 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42037,668,509 - 37,670,179 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.12037,689,664 - 37,691,334 (+)NCBI
Celera2027,549,278 - 27,550,948 (-)NCBICelera
Cytogenetic Map20q11NCBI
CALHM6
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v25136,468,847 - 136,471,457 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan16134,361,834 - 134,364,454 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v06114,263,062 - 114,265,898 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.16118,409,641 - 118,411,651 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl6118,409,813 - 118,411,574 (+)Ensemblpanpan1.1panPan2
CALHM6
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1156,894,565 - 56,896,665 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl156,894,631 - 56,896,481 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha157,689,611 - 57,691,794 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0157,076,273 - 57,078,476 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl157,076,422 - 57,078,292 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1156,970,750 - 56,972,941 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0156,818,915 - 56,821,109 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0157,447,758 - 57,449,845 (+)NCBIUU_Cfam_GSD_1.0
Calhm6
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404946107,294,056 - 107,295,902 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049368241,019,154 - 1,020,961 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049368241,019,124 - 1,020,871 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CALHM6
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl182,085,714 - 82,087,889 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1182,085,781 - 82,087,897 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2192,328,297 - 92,329,976 (-)NCBISscrofa10.2Sscrofa10.2susScr3
CALHM6
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11357,352,225 - 57,354,127 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1357,349,681 - 57,354,318 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604029,680,433 - 29,682,660 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Calhm6
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248561,986,546 - 1,992,578 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248561,989,913 - 1,992,496 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: XM_005415313   ⟹   XP_005415370
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_004955526319,920 - 321,985 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005415370 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_005415370   ⟸   XM_005415313
- Sequence:


Additional Information

Database Acc Id Source(s)
NCBI Gene Fam26f ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2017-07-18 Calhm6  calcium homeostasis modulator family member 6  Fam26f  family with sequence similarity 26 member F  Symbol and/or name change 5135510 APPROVED
2016-08-16 Fam26f  family with sequence similarity 26 member F    family with sequence similarity 26, member F  Symbol and/or name change 5135510 APPROVED