Abca1 (ATP binding cassette subfamily A member 1) - Rat Genome Database
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Gene: Abca1 (ATP binding cassette subfamily A member 1) Chinchilla lanigera
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Symbol: Abca1
Name: ATP binding cassette subfamily A member 1
RGD ID: 9065482
Description: ENCODES a protein that exhibits apolipoprotein A-I binding (ortholog); apolipoprotein A-I receptor activity (ortholog); apolipoprotein binding (ortholog); INVOLVED IN adenylate cyclase-activating G protein-coupled receptor signaling pathway (ortholog); cellular response to cholesterol (ortholog); cellular response to cytokine stimulus (ortholog); PARTICIPATES IN altered reverse cholesterol transport pathway; retinol metabolic pathway; reverse cholesterol transport pathway; ASSOCIATED WITH Alzheimer's disease (ortholog); atherosclerosis (ortholog); Chronic Hepatitis C (ortholog); FOUND IN basolateral plasma membrane (ortholog); cell surface (ortholog); endocytic vesicle (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Also known as: ATP-binding cassette sub-family A member 1; ATP-binding cassette, sub-family A (ABC1), member 1
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541921,553,835 - 21,681,619 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495541921,553,863 - 21,681,626 (+)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Molecular Pathway Annotations     Click to see Annotation Detail View
References


Genomics

Comparative Map Data
Abca1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541921,553,835 - 21,681,619 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495541921,553,863 - 21,681,626 (+)NCBIChiLan1.0ChiLan1.0
ABCA1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl9104,781,006 - 104,928,155 (-)EnsemblGRCh38hg38GRCh38
GRCh389104,781,006 - 104,928,232 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh379107,543,287 - 107,690,436 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 369106,583,104 - 106,730,257 (-)NCBINCBI36hg18NCBI36
Build 349104,622,837 - 104,769,991NCBI
Celera978,048,593 - 78,195,737 (-)NCBI
Cytogenetic Map9q31.1NCBI
HuRef977,145,450 - 77,292,489 (-)NCBIHuRef
CHM1_19107,690,161 - 107,837,338 (-)NCBICHM1_1
Abca1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39453,030,789 - 53,159,988 (-)NCBIGRCm39mm39
GRCm39 Ensembl453,030,787 - 53,159,895 (-)Ensembl
GRCm38453,030,789 - 53,159,988 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl453,030,787 - 53,159,895 (-)EnsemblGRCm38mm10GRCm38
MGSCv37453,043,661 - 53,172,767 (-)NCBIGRCm37mm9NCBIm37
MGSCv36453,051,888 - 53,180,992 (-)NCBImm8
Celera453,009,587 - 53,133,003 (-)NCBICelera
Cytogenetic Map4B2NCBI
cM Map428.57NCBI
Abca1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2567,678,267 - 67,801,162 (-)NCBI
Rnor_6.0 Ensembl569,857,771 - 69,983,015 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.0569,857,717 - 69,983,042 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.0574,023,652 - 74,112,802 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4570,493,357 - 70,583,729 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1570,498,469 - 70,588,842 (-)NCBI
Celera566,575,764 - 66,665,022 (-)NCBICelera
Cytogenetic Map5q23-q24NCBI
ABCA1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.19104,076,516 - 104,224,188 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl9104,076,516 - 104,224,188 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0975,948,831 - 76,096,136 (-)NCBIMhudiblu_PPA_v0panPan3
ABCA1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1 Ensembl1160,761,655 - 60,890,496 (-)EnsemblCanFam3.1canFam3CanFam3.1
CanFam3.11160,761,669 - 60,869,753 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Abca1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
SpeTri2.0NW_0049365597,177,887 - 7,312,660 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ABCA1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1246,144,277 - 246,278,492 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11246,144,277 - 246,278,492 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21275,475,434 - 275,507,918 (+)NCBISscrofa10.2Sscrofa10.2susScr3
ABCA1
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11234,587,123 - 34,734,936 (+)NCBI
ChlSab1.1 Ensembl1234,587,118 - 34,731,642 (+)Ensembl
Abca1
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247586,449,583 - 6,590,244 (+)NCBI


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSCLAT00000022302   ⟹   ENSCLAP00000022097
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_00495541921,553,835 - 21,681,619 (+)Ensembl
RefSeq Acc Id: XM_005382782   ⟹   XP_005382839
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495541921,553,863 - 21,681,626 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005382783   ⟹   XP_005382840
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495541921,553,863 - 21,681,626 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005382839 (Get FASTA)   NCBI Sequence Viewer  
  XP_005382840 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_005382840   ⟸   XM_005382783
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_005382839   ⟸   XM_005382782
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: ENSCLAP00000022097   ⟸   ENSCLAT00000022302


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000015148 Ensembl, ENTREZGENE
Ensembl Protein ENSCLAP00000022097 ENTREZGENE
Ensembl Transcript ENSCLAT00000022302 ENTREZGENE
NCBI Gene Abca1 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-08-16 Abca1  ATP binding cassette subfamily A member 1    ATP-binding cassette, sub-family A (ABC1), member 1  Symbol and/or name change 5135510 APPROVED