Angptl4 (angiopoietin like 4) - Rat Genome Database

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Gene: Angptl4 (angiopoietin like 4) Chinchilla lanigera
Analyze
Symbol: Angptl4
Name: angiopoietin like 4
RGD ID: 9063855
Description: ENCODES a protein that exhibits enzyme inhibitor activity (ortholog); identical protein binding (ortholog); INVOLVED IN endothelial cell apoptotic process (ortholog); negative regulation of apoptotic process (ortholog); negative regulation of endothelial cell apoptotic process (ortholog); PARTICIPATES IN lipid metabolic pathway; ASSOCIATED WITH autistic disorder (ortholog); Breast Neoplasms (ortholog); carcinoma (ortholog); FOUND IN extracellular region (ortholog); extracellular space (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: angiopoietin-like 4; angiopoietin-related protein 4
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
NCBI Annotation Information: Annotation category: partial on reference assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555631,021,414 - 1,029,894 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049555631,024,163 - 1,030,816 (-)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
Angptl4
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555631,021,414 - 1,029,894 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049555631,024,163 - 1,030,816 (-)NCBIChiLan1.0ChiLan1.0
ANGPTL4
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38198,364,155 - 8,374,370 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl198,363,289 - 8,374,370 (+)EnsemblGRCh38hg38GRCh38
GRCh37198,429,039 - 8,439,254 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36198,335,011 - 8,345,257 (+)NCBINCBI36Build 36hg18NCBI36
Build 34198,335,010 - 8,345,257NCBI
Celera198,285,662 - 8,295,909 (+)NCBICelera
Cytogenetic Map19p13.2NCBI
HuRef198,082,622 - 8,092,869 (+)NCBIHuRef
CHM1_1198,428,469 - 8,438,718 (+)NCBICHM1_1
T2T-CHM13v2.0198,350,623 - 8,360,841 (+)NCBIT2T-CHM13v2.0
Angptl4
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391733,993,874 - 34,000,549 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1733,992,724 - 34,000,804 (-)EnsemblGRCm39 Ensembl
GRCm381733,774,900 - 33,781,575 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1733,773,750 - 33,781,830 (-)EnsemblGRCm38mm10GRCm38
MGSCv371733,911,845 - 33,918,520 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361733,381,780 - 33,388,386 (-)NCBIMGSCv36mm8
Celera1736,532,223 - 36,538,898 (-)NCBICelera
Cytogenetic Map17B1NCBI
cM Map1717.98NCBI
Angptl4
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8715,252,450 - 15,259,971 (-)NCBIGRCr8
mRatBN7.2714,550,288 - 14,557,797 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl714,550,311 - 14,556,519 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx717,558,811 - 17,565,052 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0719,424,076 - 19,430,320 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0717,304,441 - 17,310,678 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0718,627,814 - 18,634,043 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl718,627,808 - 18,634,079 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0718,805,414 - 18,811,643 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4716,261,623 - 16,267,852 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1716,261,624 - 16,267,852 (-)NCBI
Celera713,448,819 - 13,455,048 (-)NCBICelera
Cytogenetic Map7q13NCBI
ANGPTL4
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22013,028,071 - 13,042,072 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11912,144,718 - 12,158,742 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0197,649,429 - 7,660,154 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1198,499,858 - 8,510,148 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl198,499,858 - 8,510,148 (+)Ensemblpanpan1.1panPan2
ANGPTL4
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12052,942,090 - 52,948,126 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2052,942,259 - 52,947,475 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2052,743,450 - 52,749,452 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02053,470,391 - 53,476,264 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2053,470,244 - 53,475,997 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12052,672,449 - 52,678,325 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02053,117,927 - 53,123,928 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02053,349,638 - 53,355,519 (+)NCBIUU_Cfam_GSD_1.0
Angptl4
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118212,639,859 - 212,645,931 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365885,188,850 - 5,194,931 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365885,188,866 - 5,194,924 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ANGPTL4
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl270,904,531 - 70,912,974 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1270,905,767 - 70,912,892 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2271,272,459 - 71,279,585 (-)NCBISscrofa10.2Sscrofa10.2susScr3
Pig Cytomap2q21-q24NCBI
ANGPTL4
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.167,719,359 - 7,728,799 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl67,719,400 - 7,729,302 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366607412,534,796 - 12,545,305 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Angptl4
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248281,152,891 - 1,158,420 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248281,152,788 - 1,158,864 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


RefSeq Acc Id: ENSCLAT00000004869   ⟹   ENSCLAP00000004780
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049555631,021,414 - 1,029,894 (-)Ensembl
RefSeq Acc Id: XM_013509151   ⟹   XP_013364605
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049555631,024,163 - 1,030,816 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_013364605 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCLAP00000004780.1
RefSeq Acc Id: XP_013364605   ⟸   XM_013509151
- Sequence:
RefSeq Acc Id: ENSCLAP00000004780   ⟸   ENSCLAT00000004869
Protein Domains
Fibrinogen C-terminal


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000003396 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000004869.1 UniProtKB/TrEMBL
Gene3D-CATH 3.90.215.10 UniProtKB/TrEMBL
  Gamma-fibrinogen Carboxyl Terminal Fragment, domain 2 UniProtKB/TrEMBL
InterPro Fibrinogen-like_C UniProtKB/TrEMBL
  Fibrinogen_a/b/g_C_1 UniProtKB/TrEMBL
  Fibrinogen_a/b/g_C_dom UniProtKB/TrEMBL
  Fibrinogen_CS UniProtKB/TrEMBL
NCBI Gene Angptl4 ENTREZGENE
PANTHER FIBRINOGEN/TENASCIN/ANGIOPOEITIN UniProtKB/TrEMBL
  PTHR19143:SF256 UniProtKB/TrEMBL
Pfam Fibrinogen_C UniProtKB/TrEMBL
PROSITE FIBRINOGEN_C_1 UniProtKB/TrEMBL
  FIBRINOGEN_C_2 UniProtKB/TrEMBL
SMART FBG UniProtKB/TrEMBL
Superfamily-SCOP SSF56496 UniProtKB/TrEMBL
UniProt A0A8C2UXM1_CHILA UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-08-16 Angptl4  angiopoietin like 4    angiopoietin-like 4  Symbol and/or name change 5135510 APPROVED