Atp2c1 (ATPase secretory pathway Ca2+ transporting 1) - Rat Genome Database

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Pathways
Gene: Atp2c1 (ATPase secretory pathway Ca2+ transporting 1) Chinchilla lanigera
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Symbol: Atp2c1
Name: ATPase secretory pathway Ca2+ transporting 1
RGD ID: 9061457
Description: ENCODES a protein that exhibits ATP binding (ortholog); calcium ion binding (ortholog); manganese ion binding (ortholog); INVOLVED IN actin cytoskeleton organization (ortholog); calcium ion transport (ortholog); calcium-dependent cell-cell adhesion via plasma membrane cell adhesion molecules (ortholog); PARTICIPATES IN calcium transport pathway; calcium/calcium-mediated signaling pathway; ASSOCIATED WITH alkaptonuria (ortholog); genetic disease (ortholog); Hailey-Hailey disease (ortholog); FOUND IN cis-Golgi network membrane (ortholog); Golgi apparatus (ortholog); Golgi cisterna membrane (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: ATPase, Ca++ transporting, type 2C, member 1; calcium-transporting ATPase type 2C member 1
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555017,383,150 - 7,519,988 (-)Ensembl
ChiLan1.0NW_0049555017,382,657 - 7,519,789 (-)NCBIChiLan1.0ChiLan1.0
JBrowse:




Disease Annotations     Click to see Annotation Detail View

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
2. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Atp2c1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555017,383,150 - 7,519,988 (-)Ensembl
ChiLan1.0NW_0049555017,382,657 - 7,519,789 (-)NCBIChiLan1.0ChiLan1.0
ATP2C1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh383130,850,595 - 131,016,712 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl3130,850,595 - 131,016,712 (+)Ensemblhg38GRCh38
GRCh373130,569,439 - 130,735,556 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 363132,096,124 - 132,218,246 (+)NCBIBuild 36Build 36hg18NCBI36
Build 343132,096,131 - 132,204,690NCBI
Celera3129,038,713 - 129,160,803 (+)NCBICelera
Cytogenetic Map3q22.1NCBI
HuRef3127,954,018 - 128,119,693 (+)NCBIHuRef
CHM1_13130,532,422 - 130,699,080 (+)NCBICHM1_1
T2T-CHM13v2.03133,594,441 - 133,760,462 (+)NCBIT2T-CHM13v2.0
Atp2c1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm399105,288,561 - 105,398,456 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl9105,280,738 - 105,404,518 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm389105,411,362 - 105,521,257 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl9105,403,539 - 105,527,319 (-)Ensemblmm10GRCm38
MGSCv379105,313,692 - 105,397,447 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv369105,269,462 - 105,353,199 (-)NCBIMGSCv36mm8
Celera9105,007,157 - 105,064,980 (-)NCBICelera
Cytogenetic Map9F1NCBI
cM Map956.61NCBI
Atp2c1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr88114,913,551 - 115,034,706 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl8114,913,415 - 115,038,826 (-)EnsemblGRCr8
mRatBN7.28106,034,777 - 106,155,854 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl8106,034,636 - 106,156,006 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx8111,672,126 - 111,755,122 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.08109,871,371 - 109,954,375 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.08107,714,075 - 107,797,076 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.08113,953,959 - 114,039,965 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl8113,955,647 - 114,013,623 (-)Ensemblrn6Rnor6.0
Rnor_5.08113,341,077 - 113,426,614 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.48110,516,092 - 110,603,620 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera8105,376,283 - 105,459,249 (-)NCBICelera
RGSC_v3.18110,562,294 - 110,623,075 (-)NCBI
Cytogenetic Map8q32NCBI
ATP2C1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22128,809,482 - 128,973,301 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan13128,814,209 - 128,978,056 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v03127,937,272 - 128,101,060 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.13135,301,721 - 135,423,700 (+)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl3135,260,796 - 135,423,700 (+)EnsemblpanPan2panpan1.1
ATP2C1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12328,097,831 - 28,233,675 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2328,066,639 - 28,235,215 (+)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha2328,071,244 - 28,206,384 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.02328,573,616 - 28,742,803 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2328,573,627 - 28,743,659 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12328,270,690 - 28,439,119 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02328,360,695 - 28,495,909 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02328,610,117 - 28,745,760 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Atp2c1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560267,579,716 - 67,714,373 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365294,361,424 - 4,474,436 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049365294,340,131 - 4,474,884 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ATP2C1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl131,438,615 - 1,612,676 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.1131,461,562 - 1,580,035 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2131,118,899 - 1,270,494 (-)NCBISscrofa10.2Sscrofa10.2susScr3
ATP2C1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11559,189,075 - 59,348,684 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1559,188,225 - 59,311,709 (-)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366604132,207,172 - 32,372,825 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Atp2c1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247306,865,197 - 7,001,378 (+)NCBIHetGla 1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSCLAT00000005913   ⟹   ENSCLAP00000005812
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049555017,383,150 - 7,519,567 (-)Ensembl
Ensembl Acc Id: ENSCLAT00000005914   ⟹   ENSCLAP00000005813
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049555017,383,157 - 7,499,078 (-)Ensembl
Ensembl Acc Id: ENSCLAT00000005915   ⟹   ENSCLAP00000005814
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049555017,399,267 - 7,519,988 (-)Ensembl
Ensembl Acc Id: ENSCLAT00000005916   ⟹   ENSCLAP00000005815
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049555017,399,267 - 7,499,232 (-)Ensembl
RefSeq Acc Id: XM_005406844   ⟹   XP_005406901
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049555017,382,657 - 7,519,787 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013505732   ⟹   XP_013361186
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049555017,383,063 - 7,519,789 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013505734   ⟹   XP_013361188
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049555017,382,657 - 7,519,789 (-)NCBI
Sequence:
RefSeq Acc Id: XP_005406901   ⟸   XM_005406844
- Peptide Label: isoform X2
- UniProtKB: A0A8C2UZ50 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013361188   ⟸   XM_013505734
- Peptide Label: isoform X3
- UniProtKB: A0A8C2UZ50 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013361186   ⟸   XM_013505732
- Peptide Label: isoform X1
- UniProtKB: A0A8C2UZ50 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSCLAP00000005815   ⟸   ENSCLAT00000005916
Ensembl Acc Id: ENSCLAP00000005814   ⟸   ENSCLAT00000005915
Ensembl Acc Id: ENSCLAP00000005813   ⟸   ENSCLAT00000005914
Ensembl Acc Id: ENSCLAP00000005812   ⟸   ENSCLAT00000005913

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000004122 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000005913.1 UniProtKB/TrEMBL
  ENSCLAT00000005914.1 UniProtKB/TrEMBL
  ENSCLAT00000005915 ENTREZGENE
  ENSCLAT00000005915.1 UniProtKB/TrEMBL
  ENSCLAT00000005916.1 UniProtKB/TrEMBL
Gene3D-CATH 3.40.1110.10 UniProtKB/TrEMBL
  3.40.50.1000 UniProtKB/TrEMBL
  Calcium-transporting ATPase, cytoplasmic transduction domain A UniProtKB/TrEMBL
  Calcium-transporting ATPase, transmembrane domain UniProtKB/TrEMBL
InterPro ATPase_P-typ_cation-transptr_C UniProtKB/TrEMBL
  ATPase_P-typ_cation-transptr_N UniProtKB/TrEMBL
  ATPase_P-typ_cyto_dom_N UniProtKB/TrEMBL
  ATPase_P-typ_P_site UniProtKB/TrEMBL
  ATPase_P-typ_TM_dom_sf UniProtKB/TrEMBL
  ATPase_P-typ_transduc_dom_A_sf UniProtKB/TrEMBL
  HAD-like_sf UniProtKB/TrEMBL
  HAD_sf UniProtKB/TrEMBL
  P-type_ATPase_IIA_PMR1 UniProtKB/TrEMBL
  P_typ_ATPase UniProtKB/TrEMBL
  P_typ_ATPase_HD_dom UniProtKB/TrEMBL
NCBI Gene Atp2c1 ENTREZGENE
PANTHER CALCIUM-TRANSPORTING ATPASE UniProtKB/TrEMBL
Pfam Cation_ATPase UniProtKB/TrEMBL
  Cation_ATPase_C UniProtKB/TrEMBL
  Cation_ATPase_N UniProtKB/TrEMBL
  E1-E2_ATPase UniProtKB/TrEMBL
PRINTS CATATPASE UniProtKB/TrEMBL
  HATPASE UniProtKB/TrEMBL
PROSITE ATPASE_E1_E2 UniProtKB/TrEMBL
SMART Cation_ATPase_N UniProtKB/TrEMBL
Superfamily-SCOP SSF56784 UniProtKB/TrEMBL
  SSF81653 UniProtKB/TrEMBL
  SSF81665 UniProtKB/TrEMBL
UniProt A0A8C2UU28_CHILA UniProtKB/TrEMBL
  A0A8C2UWH4_CHILA UniProtKB/TrEMBL
  A0A8C2UZ50 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C2V023_CHILA UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-08-03 Atp2c1  ATPase secretory pathway Ca2+ transporting 1    ATPase, Ca++ transporting, type 2C, member 1  Symbol and/or name change 5135510 APPROVED