LOC102025227 (cytochrome c oxidase subunit 6B1) - Rat Genome Database

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Gene: LOC102025227 (cytochrome c oxidase subunit 6B1) Chinchilla lanigera
Analyze
Symbol: LOC102025227 (Ensembl: COX6B1)
Name: cytochrome c oxidase subunit 6B1
RGD ID: 9060382
Description: INVOLVED IN substantia nigra development (ortholog); ASSOCIATED WITH Brugada syndrome 5 (ortholog); cytochrome-c oxidase deficiency disease (ortholog); dystonia (ortholog); FOUND IN mitochondrial membrane (ortholog); mitochondrial respiratory chain complex IV (ortholog); mitochondrion (ortholog)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554682,884,958 - 2,891,988 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554682,884,958 - 2,891,952 (-)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
2. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
LOC102025227
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554682,884,958 - 2,891,988 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554682,884,958 - 2,891,952 (-)NCBIChiLan1.0ChiLan1.0
COX6B1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381935,648,323 - 35,658,782 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1935,648,323 - 35,658,782 (+)EnsemblGRCh38hg38GRCh38
GRCh371936,139,225 - 36,149,684 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361940,830,995 - 40,841,524 (+)NCBINCBI36Build 36hg18NCBI36
Build 341940,830,994 - 40,841,523NCBI
Celera1932,852,598 - 32,863,159 (+)NCBICelera
Cytogenetic Map19q13.12NCBI
HuRef1932,644,378 - 32,654,939 (+)NCBIHuRef
CHM1_11936,140,657 - 36,151,217 (+)NCBICHM1_1
T2T-CHM13v2.01938,193,302 - 38,203,762 (+)NCBIT2T-CHM13v2.0
Cox6b1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39730,316,396 - 30,325,539 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl730,316,286 - 30,325,576 (-)EnsemblGRCm39 Ensembl
GRCm38730,616,971 - 30,626,114 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl730,616,861 - 30,626,151 (-)EnsemblGRCm38mm10GRCm38
MGSCv37731,401,993 - 31,411,170 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36722,894,581 - 22,903,778 (-)NCBIMGSCv36mm8
MGSCv36730,325,734 - 30,334,911 (-)NCBIMGSCv36mm8
Celera725,208,771 - 25,217,172 (-)NCBICelera
Cytogenetic Map7B1NCBI
cM Map718.84NCBI
Cox6b1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8195,002,513 - 95,011,516 (-)NCBIGRCr8
mRatBN7.2185,875,080 - 85,884,081 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2196,169,217 - 196,184,807 (+)EnsemblmRatBN7.2 Ensembl
mRatBN7.2 Ensembl185,875,109 - 85,884,001 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx191,291,647 - 91,298,770 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0199,757,820 - 99,764,941 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0193,049,937 - 93,057,059 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0189,075,987 - 89,084,834 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2211,337,271 - 211,337,531 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.0 Ensembl189,075,975 - 89,084,859 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0190,230,830 - 90,240,520 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4185,669,891 - 85,677,195 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera180,246,804 - 80,254,197 (-)NCBICelera
Cytogenetic Map1q21NCBI
LOC100972703
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22041,644,489 - 41,655,044 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11943,627,947 - 43,638,506 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01932,578,126 - 32,588,684 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11941,314,020 - 41,324,489 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1941,314,020 - 41,324,489 (+)Ensemblpanpan1.1panPan2
LOC612644
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11116,960,851 - 116,969,415 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1116,366,059 - 116,374,616 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01117,564,045 - 117,572,630 (-)NCBIROS_Cfam_1.0
UMICH_Zoey_3.11117,127,088 - 117,135,659 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01116,750,997 - 116,759,548 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01117,806,857 - 117,815,447 (-)NCBIUU_Cfam_GSD_1.0
LOC101972214
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024409344133,636,614 - 133,637,083 (+)NCBIHiC_Itri_2
SpeTri2.0NW_004936543399,447 - 399,911 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
COX6B
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl645,091,895 - 45,102,669 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1645,091,829 - 45,102,785 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2640,548,689 - 40,559,158 (+)NCBISscrofa10.2Sscrofa10.2susScr3
LOC103242353
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1167,611,114 - 7,611,617 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366605913,789,217 - 13,789,641 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
LOC101697786
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247949,961,643 - 9,971,948 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247949,962,206 - 9,970,501 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSCLAT00000021860   ⟹   ENSCLAP00000021657
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049554682,884,958 - 2,891,988 (-)Ensembl
RefSeq Acc Id: XM_005399978   ⟹   XP_005400035
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554682,884,958 - 2,891,952 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005400035 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCLAP00000021657
  ENSCLAP00000021657.1
Reference Protein Sequences
RefSeq Acc Id: XP_005400035   ⟸   XM_005399978
- UniProtKB: A0A8C2VYP2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSCLAP00000021657   ⟸   ENSCLAT00000021860


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000014823 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000021860 ENTREZGENE
  ENSCLAT00000021860.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.10.140 UniProtKB/TrEMBL
InterPro COX6B-like UniProtKB/TrEMBL
  Cyt_c_oxidase_su6B UniProtKB/TrEMBL
  Cyt_c_oxidase_su6B_sf UniProtKB/TrEMBL
NCBI Gene LOC102025227 ENTREZGENE
PANTHER CYTOCHROME C OXIDASE SUBUNIT 6B1 UniProtKB/TrEMBL
  PTHR11387 UniProtKB/TrEMBL
Pfam COX6B UniProtKB/TrEMBL
PIRSF Cyt_c_oxidase_6B UniProtKB/TrEMBL
PROSITE CHCH UniProtKB/TrEMBL
Superfamily-SCOP SSF47694 UniProtKB/TrEMBL
UniProt A0A8C2VYP2 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2015-08-25 LOC102025227  cytochrome c oxidase subunit 6B1    cytochrome c oxidase subunit 6B1-like  Symbol and/or name change 5135510 APPROVED