Tshz3 (teashirt zinc finger homeobox 3) - Rat Genome Database

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Gene: Tshz3 (teashirt zinc finger homeobox 3) Chinchilla lanigera
Analyze
Symbol: Tshz3
Name: teashirt zinc finger homeobox 3
RGD ID: 9059933
Description: ENCODES a protein that exhibits chromatin binding (ortholog); INVOLVED IN in utero embryonic development (ortholog); kidney morphogenesis (ortholog); kidney smooth muscle cell differentiation (ortholog); ASSOCIATED WITH autism spectrum disorder (ortholog); Neurodevelopmental Disorders (ortholog); prostate cancer (ortholog); FOUND IN growth cone (ortholog); nucleoplasm (ortholog); nucleus (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: teashirt homolog 3
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554686,448,167 - 6,519,391 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554686,448,167 - 6,669,706 (+)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISS annotations to Chinchilla, Squirrel, Bonobo and/or Dog genes from Human gene annotations

Genomics

Comparative Map Data
Tshz3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554686,448,167 - 6,519,391 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554686,448,167 - 6,669,706 (+)NCBIChiLan1.0ChiLan1.0
TSHZ3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381931,149,876 - 31,350,877 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl1931,149,979 - 31,349,436 (-)EnsemblGRCh38hg38GRCh38
GRCh371931,640,782 - 31,840,342 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361936,457,691 - 36,532,030 (-)NCBINCBI36Build 36hg18NCBI36
Build 341936,457,692 - 36,462,015NCBI
Celera1928,459,559 - 28,533,885 (-)NCBICelera
Cytogenetic Map19q12NCBI
HuRef1928,269,979 - 28,344,353 (-)NCBIHuRef
CHM1_11931,766,036 - 31,840,472 (-)NCBICHM1_1
T2T-CHM13v2.01933,668,134 - 33,868,018 (-)NCBIT2T-CHM13v2.0
Tshz3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39736,397,543 - 36,472,978 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl736,397,543 - 36,472,978 (+)EnsemblGRCm39 Ensembl
GRCm38736,698,118 - 36,773,553 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl736,698,118 - 36,773,553 (+)EnsemblGRCm38mm10GRCm38
MGSCv37737,483,137 - 37,558,476 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36736,406,878 - 36,482,217 (+)NCBIMGSCv36mm8
Celera731,843,976 - 31,919,293 (+)NCBICelera
Cytogenetic Map7B2NCBI
Tshz3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2189,386,732 - 89,460,719 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl189,381,858 - 89,460,874 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx194,786,253 - 94,858,074 (+)NCBIRnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.01103,252,264 - 103,324,085 (+)NCBIRnor_SHRSP
UTH_Rnor_WKY_Bbb_1.0196,544,550 - 96,616,354 (+)NCBIRnor_WKY
Rnor_6.0192,703,180 - 92,775,020 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl192,703,080 - 92,774,975 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0193,825,005 - 93,896,330 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4189,163,878 - 89,236,299 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1189,241,964 - 89,313,191 (+)NCBI
Celera183,731,100 - 83,802,744 (+)NCBICelera
Cytogenetic Map1q21NCBI
TSHZ3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11936,946,685 - 37,021,525 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1936,946,685 - 37,021,531 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01928,195,740 - 28,270,265 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
TSHZ3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11120,388,125 - 120,471,185 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1120,388,107 - 120,456,185 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1119,788,491 - 119,874,160 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01120,988,182 - 121,064,504 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1120,986,942 - 121,058,542 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11120,568,513 - 120,654,002 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01120,173,014 - 120,258,842 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01121,236,971 - 121,322,628 (+)NCBIUU_Cfam_GSD_1.0
Tshz3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244093497,390,093 - 7,450,456 (-)NCBIHiC_Itri_2
SpeTri2.0NW_0049365704,250,988 - 4,255,789 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TSHZ3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl641,345,470 - 41,423,700 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1641,345,466 - 41,429,239 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2636,786,277 - 36,792,635 (-)NCBISscrofa10.2Sscrofa10.2susScr3
TSHZ3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1626,334,239 - 26,409,597 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_0236660733,899,038 - 3,974,166 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Tshz3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247946,280,513 - 6,350,727 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247946,279,964 - 6,351,026 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSCLAT00000019023   ⟹   ENSCLAP00000018838
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049554686,448,167 - 6,519,391 (+)Ensembl
RefSeq Acc Id: ENSCLAT00000019024   ⟹   ENSCLAP00000018839
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049554686,513,734 - 6,517,664 (+)Ensembl
RefSeq Acc Id: XM_005400095   ⟹   XP_005400152
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554686,448,167 - 6,519,334 (+)NCBI
Sequence:
RefSeq Acc Id: XR_263394
RefSeq Status:
Type: NON-CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554686,448,173 - 6,669,706 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005400152 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_005400152   ⟸   XM_005400095
- UniProtKB: A0A8C2VTZ9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSCLAP00000018839   ⟸   ENSCLAT00000019024
RefSeq Acc Id: ENSCLAP00000018838   ⟸   ENSCLAT00000019023
Protein Domains
C2H2-type   Homeobox


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000012902 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSCLAP00000018838 ENTREZGENE
  ENSCLAP00000018838.1 UniProtKB/TrEMBL
  ENSCLAP00000018839.1 UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000019023 ENTREZGENE
  ENSCLAT00000019023.1 UniProtKB/TrEMBL
  ENSCLAT00000019024.1 UniProtKB/TrEMBL
InterPro Homeobox_dom UniProtKB/TrEMBL
  Teashirt_fam UniProtKB/TrEMBL
  Tshz3 UniProtKB/TrEMBL
  Znf_C2H2_type UniProtKB/TrEMBL
NCBI Gene LOC102006647 ENTREZGENE
PANTHER PTHR12487 UniProtKB/TrEMBL
  PTHR12487:SF5 UniProtKB/TrEMBL
PROSITE HOMEOBOX_2 UniProtKB/TrEMBL
  ZINC_FINGER_C2H2_1 UniProtKB/TrEMBL
  ZINC_FINGER_C2H2_2 UniProtKB/TrEMBL
SMART HOX UniProtKB/TrEMBL
  ZnF_C2H2 UniProtKB/TrEMBL
UniProt A0A8C2VTZ9 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C2VWW1_CHILA UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-11-22 Tshz3  teashirt zinc finger homeobox 3  Tshz3  teashirt zinc finger homeobox 3  Data Merged 737654 PROVISIONAL
2015-08-25 Tshz3  teashirt zinc finger homeobox 3  LOC102006647  uncharacterized LOC102006647  Symbol and/or name change 5135510 APPROVED