Cdon (cell adhesion associated, oncogene regulated) - Rat Genome Database

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Gene: Cdon (cell adhesion associated, oncogene regulated) Chinchilla lanigera
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Symbol: Cdon
Name: cell adhesion associated, oncogene regulated
RGD ID: 9059726
Description: INVOLVED IN anterior/posterior pattern specification (ortholog); cell adhesion (ortholog); cell fate specification (ortholog); PARTICIPATES IN Hedgehog signaling pathway; p38 MAPK signaling pathway; ASSOCIATED WITH coloboma (ortholog); Dwarfism (ortholog); gastrointestinal stromal tumor (ortholog); FOUND IN cell surface (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Also known as: cell adhesion molecule-related/down-regulated by oncogenes; LOC102027733; uncharacterized LOC102027733
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541227,003,919 - 27,065,989 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495541227,004,391 - 27,093,968 (-)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Molecular Pathway Annotations     Click to see Annotation Detail View
References


Genomics

Comparative Map Data
Cdon
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541227,003,919 - 27,065,989 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495541227,004,391 - 27,093,968 (-)NCBIChiLan1.0ChiLan1.0
CDON
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl11125,955,796 - 126,063,335 (-)EnsemblGRCh38hg38GRCh38
GRCh3811125,956,813 - 126,063,335 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh3711125,826,716 - 125,933,187 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 3611125,331,923 - 125,438,397 (-)NCBINCBI36hg18NCBI36
Build 3411125,335,783 - 125,438,397NCBI
Celera11122,988,054 - 123,098,575 (-)NCBI
Cytogenetic Map11q24.2NCBI
HuRef11121,768,684 - 121,875,085 (-)NCBIHuRef
CHM1_111125,713,444 - 125,819,847 (-)NCBICHM1_1
Cdon
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39935,332,823 - 35,418,948 (+)NCBIGRCm39mm39
GRCm39 Ensembl935,332,424 - 35,418,948 (+)Ensembl
GRCm38935,421,528 - 35,507,652 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl935,421,128 - 35,507,652 (+)EnsemblGRCm38mm10GRCm38
MGSCv37935,259,661 - 35,315,237 (+)NCBIGRCm37mm9NCBIm37
MGSCv36935,201,747 - 35,254,013 (+)NCBImm8
Celera932,686,755 - 32,744,725 (+)NCBICelera
Cytogenetic Map9A4NCBI
Cdon
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2833,775,123 - 33,861,635 (+)NCBImRatBN7.2
mRatBN7.2 Ensembl833,806,183 - 33,859,033 (+)Ensembl
Rnor_6.0836,625,757 - 36,712,091 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl836,625,733 - 36,710,949 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0836,642,905 - 36,728,577 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4835,238,899 - 35,291,743 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1835,247,664 - 35,300,509 (+)NCBI
Celera835,227,303 - 35,280,140 (+)NCBICelera
Cytogenetic Map8q21NCBI
CDON
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.111124,685,084 - 124,789,649 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl11124,685,084 - 124,786,091 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v011120,772,160 - 120,877,529 (-)NCBIMhudiblu_PPA_v0panPan3
CDON
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.158,439,606 - 8,536,088 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl58,446,346 - 8,533,426 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha58,496,514 - 8,595,988 (+)NCBI
ROS_Cfam_1.058,391,957 - 8,491,851 (+)NCBI
UMICH_Zoey_3.158,460,126 - 8,560,018 (+)NCBI
UNSW_CanFamBas_1.058,434,443 - 8,534,264 (+)NCBI
UU_Cfam_GSD_1.058,468,718 - 8,568,231 (+)NCBI
Cdon
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404947108,178,109 - 108,358,526 (-)NCBI
SpeTri2.0NW_0049365726,176,267 - 6,268,885 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CDON
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl953,079,550 - 53,178,881 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1953,079,543 - 53,178,881 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
CDON
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11117,091,778 - 117,255,354 (-)NCBI
ChlSab1.1 Ensembl1117,092,178 - 117,152,030 (-)Ensembl
Vero_WHO_p1.0NW_0236660438,742,602 - 8,983,460 (+)NCBI
Cdon
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_004624812107,632 - 203,791 (-)NCBI


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSCLAT00000025358   ⟹   ENSCLAP00000025113
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_00495541227,003,919 - 27,065,989 (-)Ensembl
RefSeq Acc Id: XM_005378484   ⟹   XP_005378541
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495541227,004,391 - 27,065,989 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013511115   ⟹   XP_013366569
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495541227,004,391 - 27,093,968 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013511116   ⟹   XP_013366570
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495541227,004,391 - 27,062,379 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013511117   ⟹   XP_013366571
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495541227,004,391 - 27,065,990 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013511118   ⟹   XP_013366572
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495541227,010,306 - 27,065,994 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013511119   ⟹   XP_013366573
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495541227,020,697 - 27,065,994 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013511120   ⟹   XP_013366574
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495541227,014,180 - 27,065,993 (-)NCBI
Sequence:
RefSeq Acc Id: XR_001232897
RefSeq Status:
Type: NON-CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495541227,010,306 - 27,066,216 (-)NCBI
Sequence:
RefSeq Acc Id: XR_001232898
RefSeq Status:
Type: NON-CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495541227,010,306 - 27,065,993 (-)NCBI
Sequence:
Reference Sequences
RefSeq Acc Id: XP_005378541   ⟸   XM_005378484
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_013366569   ⟸   XM_013511115
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_013366571   ⟸   XM_013511117
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_013366570   ⟸   XM_013511116
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_013366572   ⟸   XM_013511118
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: XP_013366574   ⟸   XM_013511120
- Peptide Label: isoform X6
- Sequence:
RefSeq Acc Id: XP_013366573   ⟸   XM_013511119
- Peptide Label: isoform X5
- Sequence:
RefSeq Acc Id: ENSCLAP00000025113   ⟸   ENSCLAT00000025358


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000017248 Ensembl, ENTREZGENE
Ensembl Protein ENSCLAP00000025113 ENTREZGENE
Ensembl Transcript ENSCLAT00000025358 ENTREZGENE
NCBI Gene Cdon ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2017-11-21 Cdon  cell adhesion associated, oncogene regulated  LOC102027733  uncharacterized LOC102027733  Data Merged 737654 PROVISIONAL