Csf2rb (colony stimulating factor 2 receptor subunit beta) - Rat Genome Database

Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Gene: Csf2rb (colony stimulating factor 2 receptor subunit beta) Chinchilla lanigera
Analyze
Symbol: Csf2rb
Name: colony stimulating factor 2 receptor subunit beta
RGD ID: 9059575
Description: ENCODES a protein that exhibits coreceptor activity (ortholog); INVOLVED IN cell surface receptor signaling pathway via JAK-STAT (ortholog); granulocyte-macrophage colony-stimulating factor signaling pathway (ortholog); interleukin-3-mediated signaling pathway (ortholog); PARTICIPATES IN granulocyte-macrophage colony-stimulating factor signaling pathway; interleukin-3 signaling pathway; interleukin-5 signaling pathway; ASSOCIATED WITH adenylosuccinase lyase deficiency (ortholog); asthma (ortholog); autosomal recessive chronic granulomatous disease 3 (ortholog); FOUND IN granulocyte macrophage colony-stimulating factor receptor complex (ortholog); plasma membrane (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: colony stimulating factor 2 receptor beta common subunit; colony stimulating factor 2 receptor, beta, low-affinity (granulocyte-macrophage); cytokine receptor common subunit beta
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541323,449,111 - 23,463,820 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495541323,442,417 - 23,465,093 (+)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
2. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Csf2rb
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541323,449,111 - 23,463,820 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495541323,442,417 - 23,465,093 (+)NCBIChiLan1.0ChiLan1.0
CSF2RB
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382236,913,628 - 36,940,439 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2236,913,628 - 36,940,439 (+)EnsemblGRCh38hg38GRCh38
GRCh372237,309,670 - 37,336,481 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 362235,648,168 - 35,664,764 (+)NCBINCBI36Build 36hg18NCBI36
Build 342235,642,721 - 35,659,318NCBI
Celera2221,111,014 - 21,137,820 (+)NCBICelera
Cytogenetic Map22q12.3NCBI
HuRef2220,271,284 - 20,300,485 (+)NCBIHuRef
CHM1_12237,269,205 - 37,296,007 (+)NCBICHM1_1
T2T-CHM13v2.02237,372,586 - 37,399,383 (+)NCBIT2T-CHM13v2.0
Csf2rb2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391578,166,707 - 78,189,921 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1578,166,707 - 78,189,921 (-)EnsemblGRCm39 Ensembl
GRCm381578,282,507 - 78,305,721 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1578,282,507 - 78,305,721 (-)EnsemblGRCm38mm10GRCm38
MGSCv371578,112,940 - 78,136,033 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361578,109,765 - 78,132,858 (-)NCBIMGSCv36mm8
Celera1579,743,456 - 79,766,549 (-)NCBICelera
Cytogenetic Map15E1NCBI
cM Map1537.22NCBI
Csf2rb
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr87111,756,950 - 111,782,089 (+)NCBIGRCr8
mRatBN7.27109,876,919 - 109,901,589 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl7109,886,425 - 109,904,157 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx7111,626,685 - 111,649,953 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.07113,850,226 - 113,873,488 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.07113,818,844 - 113,842,074 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.07119,554,383 - 119,568,248 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl7119,554,354 - 119,568,776 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.07119,544,873 - 119,558,539 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.47116,227,239 - 116,271,993 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.17116,271,510 - 116,306,223 (+)NCBI
Celera7106,216,478 - 106,238,726 (+)NCBICelera
Cytogenetic Map7q34NCBI
CSF2RB
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22346,770,999 - 46,797,941 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12249,462,363 - 49,489,315 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02217,831,313 - 17,858,272 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12235,666,729 - 35,693,708 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2235,666,734 - 35,693,701 (+)Ensemblpanpan1.1panPan2
CSF2RB
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11027,541,645 - 27,566,907 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1027,541,647 - 27,567,278 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1027,496,146 - 27,521,244 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01028,333,755 - 28,358,851 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1028,333,760 - 28,358,984 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11028,055,276 - 28,080,375 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01028,363,777 - 28,388,879 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01028,542,588 - 28,567,688 (-)NCBIUU_Cfam_GSD_1.0
Csf2rb
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494510,919,175 - 10,950,319 (-)NCBIHiC_Itri_2
SpeTri2.0NW_0049364923,929,589 - 3,974,070 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CSF2RB
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl510,816,376 - 10,840,618 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1510,816,366 - 10,840,613 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.258,415,807 - 8,439,906 (-)NCBISscrofa10.2Sscrofa10.2susScr3
CSF2RB
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11919,614,719 - 19,642,546 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1919,624,234 - 19,640,617 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666045106,220,245 - 106,247,737 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSCLAT00000024578   ⟹   ENSCLAP00000024343
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_00495541323,449,111 - 23,463,820 (+)Ensembl
RefSeq Acc Id: XM_005379171   ⟹   XP_005379228
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495541323,442,417 - 23,465,093 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005379172   ⟹   XP_005379229
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495541323,442,417 - 23,465,093 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005379173   ⟹   XP_005379230
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495541323,442,418 - 23,465,093 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005379174   ⟹   XP_005379231
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495541323,451,878 - 23,465,093 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013511574   ⟹   XP_013367028
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495541323,451,878 - 23,465,093 (+)NCBI
Sequence:
RefSeq Acc Id: XP_005379229   ⟸   XM_005379172
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_005379228   ⟸   XM_005379171
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_005379230   ⟸   XM_005379173
- Peptide Label: isoform X2
- UniProtKB: A0A8C2YUJ5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005379231   ⟸   XM_005379174
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_013367028   ⟸   XM_013511574
- Peptide Label: isoform X4
- Sequence:
Ensembl Acc Id: ENSCLAP00000024343   ⟸   ENSCLAT00000024578
Protein Domains
Fibronectin type-III


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000016718 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000024578 ENTREZGENE
  ENSCLAT00000024578.1 UniProtKB/TrEMBL
Gene3D-CATH 2.60.40.10 UniProtKB/TrEMBL
InterPro FN3_dom UniProtKB/TrEMBL
  FN3_sf UniProtKB/TrEMBL
  Hempt_rcpt_S_F1_CS UniProtKB/TrEMBL
  Ig-like_fold UniProtKB/TrEMBL
  IL3RB_N UniProtKB/TrEMBL
  TypeI_recpt_CBD UniProtKB/TrEMBL
NCBI Gene Csf2rb ENTREZGENE
PANTHER CYTOKINE RECEPTOR UniProtKB/TrEMBL
  FIBRONECTIN TYPE-III DOMAIN-CONTAINING PROTEIN UniProtKB/TrEMBL
Pfam IL3Rb_N UniProtKB/TrEMBL
  IL6Ra-bind UniProtKB/TrEMBL
PROSITE FN3 UniProtKB/TrEMBL
  HEMATOPO_REC_S_F1 UniProtKB/TrEMBL
SMART FN3 UniProtKB/TrEMBL
Superfamily-SCOP SSF49265 UniProtKB/TrEMBL
UniProt A0A8C2YUJ5 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-09-07 Csf2rb  colony stimulating factor 2 receptor subunit beta  Csf2rb  colony stimulating factor 2 receptor beta common subunit  Symbol and/or name change 5135510 APPROVED
2016-08-03 Csf2rb  colony stimulating factor 2 receptor beta common subunit    colony stimulating factor 2 receptor, beta, low-affinity (granulocyte-macrophage)  Symbol and/or name change 5135510 APPROVED