Pafah1b3 (platelet activating factor acetylhydrolase 1b catalytic subunit 3) - Rat Genome Database

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Gene: Pafah1b3 (platelet activating factor acetylhydrolase 1b catalytic subunit 3) Chinchilla lanigera
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Symbol: Pafah1b3
Name: platelet activating factor acetylhydrolase 1b catalytic subunit 3
RGD ID: 9058874
Description: ENCODES a protein that exhibits 1-alkyl-2-acetylglycerophosphocholine esterase activity (ortholog); identical protein binding (ortholog); platelet-activating factor acetyltransferase activity (ortholog); INVOLVED IN spermatogenesis (ortholog); PARTICIPATES IN altered Reelin signaling pathway; Reelin signaling pathway; ASSOCIATED WITH autism spectrum disorder (ortholog); autosomal dominant intellectual developmental disorder 45 (ortholog); Carpenter Syndrome 2 (ortholog); FOUND IN 1-alkyl-2-acetylglycerophosphocholine esterase complex (ortholog); cytoplasm (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: platelet-activating factor acetylhydrolase 1b, catalytic subunit 3 (29kDa); platelet-activating factor acetylhydrolase IB subunit gamma
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955555609,925 - 612,701 (+)EnsemblChiLan1.0
ChiLan1.0NW_004955555609,925 - 612,701 (+)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species

Genomics

Comparative Map Data
Pafah1b3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955555609,925 - 612,701 (+)EnsemblChiLan1.0
ChiLan1.0NW_004955555609,925 - 612,701 (+)NCBIChiLan1.0ChiLan1.0
PAFAH1B3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381942,297,033 - 42,302,800 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1942,297,033 - 42,303,546 (-)EnsemblGRCh38hg38GRCh38
GRCh371942,801,185 - 42,806,952 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361947,493,025 - 47,498,563 (-)NCBINCBI36Build 36hg18NCBI36
Build 341947,493,024 - 47,498,563NCBI
Celera1939,601,981 - 39,607,748 (-)NCBICelera
Cytogenetic Map19q13.2NCBI
HuRef1939,231,325 - 39,237,093 (-)NCBIHuRef
CHM1_11942,802,836 - 42,808,603 (-)NCBICHM1_1
T2T-CHM13v2.01945,116,406 - 45,122,173 (-)NCBIT2T-CHM13v2.0
Pafah1b3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39724,994,473 - 24,997,377 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl724,994,474 - 24,997,411 (-)EnsemblGRCm39 Ensembl
GRCm38725,295,048 - 25,297,986 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl725,295,049 - 25,297,986 (-)EnsemblGRCm38mm10GRCm38
MGSCv37726,080,068 - 26,082,974 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36725,003,809 - 25,006,715 (-)NCBIMGSCv36mm8
Celera719,910,093 - 19,912,999 (-)NCBICelera
Cytogenetic Map7A3NCBI
cM Map713.73NCBI
Pafah1b3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8190,009,085 - 90,011,611 (-)NCBIGRCr8
mRatBN7.2180,881,263 - 80,883,789 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl180,881,309 - 80,883,893 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx186,273,482 - 86,276,008 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0194,824,609 - 94,827,135 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0188,029,259 - 88,031,785 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0182,163,733 - 82,166,259 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl182,163,595 - 82,166,363 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0183,427,895 - 83,430,421 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4180,570,160 - 80,572,686 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1180,648,270 - 80,650,797 (-)NCBI
Celera175,324,171 - 75,326,697 (-)NCBICelera
Cytogenetic Map1q21NCBI
PAFAH1B3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22048,401,972 - 48,407,301 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11950,270,609 - 50,275,893 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01939,184,734 - 39,190,522 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11133,455,270 - 133,455,822 (-)NCBIpanpan1.1PanPan1.1panPan2
PAFAH1B3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11112,078,131 - 112,080,874 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1112,063,074 - 112,080,873 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1111,504,270 - 111,507,037 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01112,690,772 - 112,693,507 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1112,676,028 - 112,693,506 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11112,244,948 - 112,247,717 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01111,880,891 - 111,883,654 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01112,807,432 - 112,810,199 (+)NCBIUU_Cfam_GSD_1.0
Pafah1b3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934915,849,621 - 15,868,155 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936706212,096 - 215,497 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936706212,635 - 215,498 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PAFAH1B3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl649,619,241 - 49,638,171 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1649,635,625 - 49,638,172 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2645,556,126 - 45,558,674 (+)NCBISscrofa10.2Sscrofa10.2susScr3
PAFAH1B3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1636,501,726 - 36,508,027 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl636,501,314 - 36,507,846 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366607314,747,530 - 14,753,859 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Pafah1b3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624907454,407 - 459,441 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624907454,434 - 457,551 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


RefSeq Acc Id: ENSCLAT00000000966   ⟹   ENSCLAP00000000929
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_004955555609,925 - 612,701 (+)Ensembl
RefSeq Acc Id: ENSCLAT00000000967   ⟹   ENSCLAP00000000930
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_004955555610,422 - 611,859 (+)Ensembl
RefSeq Acc Id: XM_005412366   ⟹   XP_005412423
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_004955555609,925 - 612,701 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013508687   ⟹   XP_013364141
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_004955555610,113 - 612,701 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005412423 (Get FASTA)   NCBI Sequence Viewer  
  XP_013364141 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCLAP00000000929
  ENSCLAP00000000929.1
  ENSCLAP00000000930.1
RefSeq Acc Id: XP_005412423   ⟸   XM_005412366
- UniProtKB: A0A8C2UM64 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013364141   ⟸   XM_013508687
- UniProtKB: A0A8C2UM64 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSCLAP00000000930   ⟸   ENSCLAT00000000967
RefSeq Acc Id: ENSCLAP00000000929   ⟸   ENSCLAT00000000966

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000000723 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000000966 ENTREZGENE
  ENSCLAT00000000966.1 UniProtKB/TrEMBL
  ENSCLAT00000000967.1 UniProtKB/TrEMBL
Gene3D-CATH 3.40.50.1110 UniProtKB/TrEMBL
InterPro SGNH_hydro UniProtKB/TrEMBL
  SGNH_hydro_sf UniProtKB/TrEMBL
NCBI Gene Pafah1b3 ENTREZGENE
PANTHER PLATELET-ACTIVATING FACTOR ACETYLHYDROLASE UniProtKB/TrEMBL
  PLATELET-ACTIVATING FACTOR ACETYLHYDROLASE IB SUBUNIT ALPHA1 UniProtKB/TrEMBL
  PLATELET-ACTIVATING FACTOR ACETYLHYDROLASE IB SUBUNIT BETA HOMOLOG UniProtKB/TrEMBL
Pfam Lipase_GDSL_2 UniProtKB/TrEMBL
Superfamily-SCOP SGNH hydrolase UniProtKB/TrEMBL
UniProt A0A8C2UH96_CHILA UniProtKB/TrEMBL
  A0A8C2UM64 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-08-16 Pafah1b3  platelet activating factor acetylhydrolase 1b catalytic subunit 3    platelet-activating factor acetylhydrolase 1b, catalytic subunit 3 (29kDa)  Symbol and/or name change 5135510 APPROVED