Cenps (centromere protein S) - Rat Genome Database

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Gene: Cenps (centromere protein S) Chinchilla lanigera
Analyze
Symbol: Cenps
Name: centromere protein S
RGD ID: 9058673
Description: ENCODES a protein that exhibits chromatin binding (ortholog); DNA binding (ortholog); double-stranded DNA binding (ortholog); INVOLVED IN DNA damage response (ortholog); DNA repair (ortholog); interstrand cross-link repair (ortholog); ASSOCIATED WITH Charcot-Marie-Tooth disease type 2 (ortholog); chromosome 1p36 deletion syndrome (ortholog); genetic disease (ortholog); FOUND IN chromatin (ortholog); FANCM-MHF complex (ortholog); Fanconi anaemia nuclear complex (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: Apitd1; apoptosis-inducing, TAF9-like domain 1
RGD Orthologs
Human
Mouse
Rat
Bonobo
Pig
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554863,157,535 - 3,167,397 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554863,157,535 - 3,167,424 (-)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Cenps
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554863,157,535 - 3,167,397 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554863,157,535 - 3,167,424 (-)NCBIChiLan1.0ChiLan1.0
CENPS
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38110,430,433 - 10,442,808 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl110,430,433 - 10,442,808 (+)EnsemblGRCh38hg38GRCh38
GRCh37110,490,490 - 10,502,865 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36110,412,746 - 10,434,797 (+)NCBINCBI36Build 36hg18NCBI36
Celera19,601,550 - 9,623,464 (+)NCBICelera
Cytogenetic Map1p36.22NCBI
HuRef19,643,798 - 9,656,502 (+)NCBIHuRef
CHM1_1110,477,737 - 10,490,612 (+)NCBICHM1_1
T2T-CHM13v2.019,974,048 - 9,986,421 (+)NCBIT2T-CHM13v2.0
Cenps
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm394149,212,806 - 149,222,057 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl4149,211,578 - 149,222,086 (-)EnsemblGRCm39 Ensembl
GRCm384149,128,349 - 149,137,600 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl4149,127,121 - 149,137,629 (-)EnsemblGRCm38mm10GRCm38
MGSCv374148,502,458 - 148,511,709 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv364147,972,149 - 147,981,350 (-)NCBIMGSCv36mm8
Celera4151,394,399 - 151,403,592 (-)NCBICelera
Cytogenetic Map4E2NCBI
cM Map478.89NCBI
Cenps
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr85164,847,009 - 164,856,705 (-)NCBIGRCr8
mRatBN7.25159,563,917 - 159,573,534 (-)NCBImRatBN7.2mRatBN7.2
UTH_Rnor_SHR_Utx5162,280,626 - 162,290,243 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.05164,101,318 - 164,110,806 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.05164,057,690 - 164,067,178 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.05165,946,106 - 165,955,723 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.05169,596,287 - 169,605,817 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera5157,834,868 - 157,844,482 (-)NCBICelera
Cytogenetic Map5q36NCBI
CENPS
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21217,775,591 - 217,797,122 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11216,421,508 - 216,443,031 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v019,190,303 - 9,211,812 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1110,415,778 - 10,436,977 (+)NCBIpanpan1.1PanPan1.1panPan2
APITD1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl670,701,694 - 70,711,717 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1670,700,802 - 70,711,719 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2664,634,440 - 64,644,541 (+)NCBISscrofa10.2Sscrofa10.2susScr3
Cenps
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248182,249,369 - 2,256,834 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248182,244,114 - 2,256,870 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSCLAT00000011446   ⟹   ENSCLAP00000011309
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049554863,157,535 - 3,167,397 (-)Ensembl
RefSeq Acc Id: ENSCLAT00000011447   ⟹   ENSCLAP00000011310
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049554863,157,876 - 3,167,321 (-)Ensembl
RefSeq Acc Id: XM_005404017   ⟹   XP_005404074
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554863,157,535 - 3,167,397 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013504292   ⟹   XP_013359746
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554863,158,023 - 3,167,424 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005404074 (Get FASTA)   NCBI Sequence Viewer  
  XP_013359746 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCLAP00000011309.1
  ENSCLAP00000011310
  ENSCLAP00000011310.1
Reference Protein Sequences
RefSeq Acc Id: XP_005404074   ⟸   XM_005404017
- Peptide Label: isoform X1
- UniProtKB: A0A8C2VDE6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013359746   ⟸   XM_013504292
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: ENSCLAP00000011310   ⟸   ENSCLAT00000011447
RefSeq Acc Id: ENSCLAP00000011309   ⟸   ENSCLAT00000011446


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000007803 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000011446.1 UniProtKB/TrEMBL
  ENSCLAT00000011447 ENTREZGENE
  ENSCLAT00000011447.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.20.10 UniProtKB/TrEMBL
InterPro CENP-S/Mhf1 UniProtKB/TrEMBL
  Histone-fold UniProtKB/TrEMBL
NCBI Gene Apitd1 ENTREZGENE
PANTHER CENTROMERE PROTEIN S UniProtKB/TrEMBL
  CORTISTATIN UniProtKB/TrEMBL
Pfam CENP-S UniProtKB/TrEMBL
Superfamily-SCOP SSF47113 UniProtKB/TrEMBL
UniProt A0A8C2VAT1_CHILA UniProtKB/TrEMBL
  A0A8C2VDE6 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-09-13 Cenps  centromere protein S  Apitd1  apoptosis-inducing, TAF9-like domain 1  Symbol and/or name change 5135510 APPROVED