Myo5c (myosin VC) - Rat Genome Database

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Gene: Myo5c (myosin VC) Chinchilla lanigera
Analyze
Symbol: Myo5c
Name: myosin VC
RGD ID: 9058148
Description: ASSOCIATED WITH Bloom syndrome (ortholog); colorectal cancer (ortholog); genetic disease (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: unconventional myosin-Vc
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
NCBI Annotation Information: Annotation category: partial on reference assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554092,546,909 - 2,612,490 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554092,543,520 - 2,612,867 (+)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Myo5c
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554092,546,909 - 2,612,490 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554092,543,520 - 2,612,867 (+)NCBIChiLan1.0ChiLan1.0
MYO5C
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381552,192,322 - 52,295,804 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1552,192,322 - 52,295,804 (-)EnsemblGRCh38hg38GRCh38
GRCh371552,484,519 - 52,588,001 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361550,271,811 - 50,375,262 (-)NCBINCBI36Build 36hg18NCBI36
Build 341550,271,811 - 50,375,144NCBI
Celera1529,378,960 - 29,483,015 (-)NCBICelera
Cytogenetic Map15q21.2NCBI
HuRef1529,315,479 - 29,418,640 (-)NCBIHuRef
CHM1_11552,602,819 - 52,705,954 (-)NCBICHM1_1
T2T-CHM13v2.01550,000,957 - 50,104,091 (-)NCBIT2T-CHM13v2.0
Myo5c
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39975,139,252 - 75,212,733 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl975,139,302 - 75,212,733 (+)EnsemblGRCm39 Ensembl
GRCm38975,231,969 - 75,307,485 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl975,232,020 - 75,305,451 (+)EnsemblGRCm38mm10GRCm38
MGSCv37975,079,821 - 75,153,258 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36975,017,923 - 75,091,360 (+)NCBIMGSCv36mm8
Celera972,390,763 - 72,464,225 (+)NCBICelera
Cytogenetic Map9DNCBI
cM Map942.3NCBI
Myo5c
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8884,870,031 - 84,946,996 (+)NCBIGRCr8
mRatBN7.2875,989,497 - 76,066,485 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl875,989,528 - 76,066,483 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx881,496,835 - 81,574,055 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0879,761,746 - 79,838,757 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0877,596,161 - 77,673,391 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0882,171,296 - 82,248,109 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl882,171,497 - 82,247,544 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0881,771,484 - 81,851,384 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4880,101,971 - 80,119,034 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1880,057,940 - 80,136,830 (+)NCBI
Celera875,779,366 - 75,856,253 (+)NCBICelera
Cytogenetic Map8q24NCBI
MYO5C
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21641,429,040 - 41,530,708 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11545,609,547 - 45,711,119 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01531,133,566 - 31,235,074 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11549,459,741 - 49,549,746 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1549,459,741 - 49,549,752 (-)Ensemblpanpan1.1panPan2
MYO5C
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13017,888,422 - 17,972,365 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3017,888,419 - 18,213,061 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3017,817,644 - 17,912,246 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03018,036,561 - 18,131,347 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3018,036,563 - 18,131,405 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13017,955,619 - 18,050,528 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03018,073,656 - 18,168,273 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03018,181,247 - 18,275,989 (-)NCBIUU_Cfam_GSD_1.0
Myo5c
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440864096,155,020 - 96,246,535 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647114,003,515 - 14,094,587 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647114,003,478 - 14,094,560 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
MYO5C
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1119,407,351 - 119,536,419 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11119,407,298 - 119,536,443 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21132,497,200 - 132,624,942 (+)NCBISscrofa10.2Sscrofa10.2susScr3
MYO5C
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12631,095,461 - 31,196,514 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2631,107,036 - 31,196,049 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666048110,032,427 - 110,134,967 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Myo5c
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247318,289,051 - 8,353,346 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247318,288,954 - 8,358,447 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSCLAT00000010585   ⟹   ENSCLAP00000010454
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049554092,546,909 - 2,612,490 (+)Ensembl
RefSeq Acc Id: XM_013510284   ⟹   XP_013365738
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554092,543,520 - 2,612,867 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_013365738 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCLAP00000010454
  ENSCLAP00000010454.1
Reference Protein Sequences
RefSeq Acc Id: XP_013365738   ⟸   XM_013510284
- UniProtKB: A0A8C2V5U1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSCLAP00000010454   ⟸   ENSCLAT00000010585
Protein Domains
Dilute   Myosin motor   Myosin N-terminal SH3-like


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000007222 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000010585 ENTREZGENE
  ENSCLAT00000010585.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.10.820 UniProtKB/TrEMBL
  1.20.5.190 UniProtKB/TrEMBL
  1.20.58.530 UniProtKB/TrEMBL
  3.30.70.1590 UniProtKB/TrEMBL
  3.40.850.10 UniProtKB/TrEMBL
  Myosin VI head, motor domain, U50 subdomain UniProtKB/TrEMBL
InterPro Dilute_dom UniProtKB/TrEMBL
  IQ_motif_EF-hand-BS UniProtKB/TrEMBL
  Kinesin_motor_dom_sf UniProtKB/TrEMBL
  Myo5c_CBD UniProtKB/TrEMBL
  Myosin_head_motor_dom UniProtKB/TrEMBL
  Myosin_N UniProtKB/TrEMBL
  MYSc_Myo5 UniProtKB/TrEMBL
  P-loop_NTPase UniProtKB/TrEMBL
NCBI Gene Myo5c ENTREZGENE
PANTHER MYOSIN UniProtKB/TrEMBL
Pfam DIL UniProtKB/TrEMBL
  Myosin_head UniProtKB/TrEMBL
  PF00612 UniProtKB/TrEMBL
PRINTS MYOSINHEAVY UniProtKB/TrEMBL
PROSITE DILUTE UniProtKB/TrEMBL
  MYOSIN_MOTOR UniProtKB/TrEMBL
  PS50096 UniProtKB/TrEMBL
  SH3_LIKE UniProtKB/TrEMBL
SMART DIL UniProtKB/TrEMBL
  MYSc UniProtKB/TrEMBL
  SM00015 UniProtKB/TrEMBL
Superfamily-SCOP SSF52540 UniProtKB/TrEMBL
UniProt A0A8C2V5U1 ENTREZGENE, UniProtKB/TrEMBL