Ifit1 (interferon induced protein with tetratricopeptide repeats 1) - Rat Genome Database

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Gene: Ifit1 (interferon induced protein with tetratricopeptide repeats 1) Chinchilla lanigera
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Symbol: Ifit1
Name: interferon induced protein with tetratricopeptide repeats 1
RGD ID: 9057989
Description: ENCODES a protein that exhibits RNA binding (ortholog); INVOLVED IN antiviral innate immune response (ortholog); cellular response to exogenous dsRNA (ortholog); cellular response to type I interferon (ortholog); ASSOCIATED WITH endometriosis (ortholog); Human Influenza (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Also known as: interferon-induced protein with tetratricopeptide repeats 1
RGD Orthologs
Human
Mouse
Bonobo
Dog
Green Monkey
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_0049554253,581,705 - 3,588,528 (-)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
cytoplasm  (ISO)
cytosol  (ISO)

Molecular Function

References


Genomics

Comparative Map Data
Ifit1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_0049554253,581,705 - 3,588,528 (-)NCBIChiLan1.0ChiLan1.0
IFIT1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl1089,392,546 - 89,406,487 (+)EnsemblGRCh38hg38GRCh38
GRCh381089,392,623 - 89,406,487 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh371091,152,380 - 91,166,244 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361091,142,302 - 91,153,725 (+)NCBINCBI36hg18NCBI36
Build 341091,142,357 - 91,153,582NCBI
Celera1084,899,140 - 84,910,558 (+)NCBI
Cytogenetic Map10q23.31NCBI
HuRef1084,786,482 - 84,800,420 (+)NCBIHuRef
CHM1_11091,434,351 - 91,448,270 (+)NCBICHM1_1
Ifit1bl1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391934,570,288 - 34,640,382 (-)NCBIGRCm39mm39
GRCm39 Ensembl1934,570,291 - 34,579,356 (-)Ensembl
GRCm381934,592,888 - 34,662,981 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1934,592,891 - 34,601,956 (-)EnsemblGRCm38mm10GRCm38
MGSCv371934,667,378 - 34,676,458 (-)NCBIGRCm37mm9NCBIm37
MGSCv361934,658,885 - 34,667,965 (-)NCBImm8
Celera1935,369,714 - 35,376,253 (-)NCBICelera
Cytogenetic Map19C1NCBI
IFIT1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11089,657,365 - 89,671,327 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1089,667,149 - 89,668,579 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01086,117,807 - 86,129,256 (+)NCBIMhudiblu_PPA_v0panPan3
LOC488947
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.14125,675 - 133,304 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl484,720 - 132,981 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha4168,780 - 175,807 (+)NCBI
ROS_Cfam_1.04148,587 - 155,614 (+)NCBI
ROS_Cfam_1.0 Ensembl4141,852 - 156,065 (+)Ensembl
UMICH_Zoey_3.14136,002 - 143,029 (+)NCBI
UNSW_CanFamBas_1.04243,674 - 250,701 (+)NCBI
UU_Cfam_GSD_1.04443,560 - 450,587 (+)NCBI
IFIT1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1982,778,546 - 82,797,678 (+)NCBIChlSab1.1chlSab2
ChlSab1.1 Ensembl982,785,898 - 82,798,621 (+)EnsemblChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366604843,460,789 - 43,472,274 (+)NCBIVero_WHO_p1.0


Expression


Sequence


Reference Sequences
RefSeq Acc Id: XM_005385850   ⟹   XP_005385907
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554253,581,705 - 3,588,528 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005385907 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_005385907   ⟸   XM_005385850
- Sequence:


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000009282 ENTREZGENE
Ensembl Protein ENSCLAP00000013429 ENTREZGENE
Ensembl Transcript ENSCLAT00000013582 ENTREZGENE
NCBI Gene Ifit1 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-08-16 Ifit1  interferon induced protein with tetratricopeptide repeats 1    interferon-induced protein with tetratricopeptide repeats 1  Symbol and/or name change 5135510 APPROVED