Sult4a1 (sulfotransferase family 4A member 1) - Rat Genome Database

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Gene: Sult4a1 (sulfotransferase family 4A member 1) Chinchilla lanigera
Analyze
Symbol: Sult4a1
Name: sulfotransferase family 4A member 1
RGD ID: 9057269
Description: ENCODES a protein that exhibits identical protein binding (ortholog); sulfotransferase activity (ortholog); INVOLVED IN dendrite arborization (ortholog); sulfur compound metabolic process (ortholog); ASSOCIATED WITH genetic disease (ortholog); intellectual disability (ortholog); Phelan-McDermid syndrome (ortholog); FOUND IN cytosol (ortholog); mitochondrion (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: sulfotransferase 4A1; sulfotransferase family 4A, member 1
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541328,797,645 - 28,821,088 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495541328,800,537 - 28,821,082 (-)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
cytosol  (ISO)
mitochondrion  (ISO)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Sult4a1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541328,797,645 - 28,821,088 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495541328,800,537 - 28,821,082 (-)NCBIChiLan1.0ChiLan1.0
SULT4A1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382243,824,509 - 43,862,513 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2243,824,509 - 43,862,513 (-)EnsemblGRCh38hg38GRCh38
GRCh372244,220,389 - 44,258,393 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 362242,551,720 - 42,589,711 (-)NCBINCBI36Build 36hg18NCBI36
Build 342242,545,289 - 42,583,257NCBI
Celera2228,131,680 - 28,168,899 (-)NCBICelera
Cytogenetic Map22q13.31NCBI
HuRef2227,174,799 - 27,191,668 (-)NCBIHuRef
CHM1_12244,179,106 - 44,216,628 (-)NCBICHM1_1
T2T-CHM13v2.02244,307,367 - 44,345,097 (-)NCBIT2T-CHM13v2.0
Sult4a1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391583,960,298 - 83,989,955 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1583,960,298 - 83,989,955 (-)EnsemblGRCm39 Ensembl
GRCm381584,076,097 - 84,105,754 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1584,076,097 - 84,105,754 (-)EnsemblGRCm38mm10GRCm38
MGSCv371583,906,527 - 83,936,184 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361583,903,863 - 83,933,520 (-)NCBIMGSCv36mm8
Celera1586,206,275 - 86,235,878 (-)NCBICelera
Cytogenetic Map15E2NCBI
cM Map1539.73NCBI
Sult4a1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr87117,096,064 - 117,120,714 (-)NCBIGRCr8
mRatBN7.27115,216,066 - 115,240,156 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl7115,216,066 - 115,240,085 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx7116,963,947 - 116,987,966 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.07119,189,653 - 119,213,672 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.07119,159,119 - 119,183,138 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.07124,958,546 - 124,982,602 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl7124,958,546 - 124,982,566 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.07124,946,961 - 124,971,011 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera7111,522,078 - 111,546,043 (-)NCBICelera
Cytogenetic Map7q34NCBI
SULT4A1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22353,651,729 - 53,690,705 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12256,345,149 - 56,383,037 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02224,712,960 - 24,751,078 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12242,905,463 - 42,922,260 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2242,906,959 - 42,927,236 (-)Ensemblpanpan1.1panPan2
SULT4A1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11021,781,562 - 21,815,059 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1021,781,487 - 21,814,006 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1021,722,268 - 21,755,762 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01022,530,422 - 22,563,935 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1022,530,347 - 22,562,882 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11022,249,779 - 22,283,267 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01022,569,893 - 22,603,392 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01022,743,989 - 22,777,510 (+)NCBIUU_Cfam_GSD_1.0
Sult4a1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244049455,420,418 - 5,442,706 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049367181,533,786 - 1,559,749 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049367181,537,459 - 1,559,743 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SULT4A1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl55,131,252 - 5,156,894 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.155,131,272 - 5,156,898 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.252,524,715 - 2,549,854 (+)NCBISscrofa10.2Sscrofa10.2susScr3
SULT4A1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11926,339,693 - 26,379,260 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1926,339,582 - 26,379,249 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604599,026,953 - 99,063,862 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Sult4a1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247525,272,276 - 5,294,615 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247525,272,212 - 5,301,350 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSCLAT00000025324   ⟹   ENSCLAP00000025079
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_00495541328,797,645 - 28,821,088 (-)Ensembl
RefSeq Acc Id: XM_005379446   ⟹   XP_005379503
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495541328,800,537 - 28,821,082 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013511268   ⟹   XP_013366722
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495541328,803,493 - 28,821,082 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005379503 (Get FASTA)   NCBI Sequence Viewer  
  XP_013366722 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCLAP00000025079
  ENSCLAP00000025079.1
Reference Protein Sequences
RefSeq Acc Id: XP_005379503   ⟸   XM_005379446
- Peptide Label: isoform X1
- UniProtKB: A0A8C2W6Q3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013366722   ⟸   XM_013511268
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: ENSCLAP00000025079   ⟸   ENSCLAT00000025324
Protein Domains
Sulfotransferase


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000017221 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000025324 ENTREZGENE
  ENSCLAT00000025324.1 UniProtKB/TrEMBL
Gene3D-CATH 3.40.50.300 UniProtKB/TrEMBL
InterPro P-loop_NTPase UniProtKB/TrEMBL
  Sulfotransferase_dom UniProtKB/TrEMBL
NCBI Gene Sult4a1 ENTREZGENE
PANTHER SULFOTRANSFERASE 4A1 UniProtKB/TrEMBL
  SULFOTRANSFERASE SULT UniProtKB/TrEMBL
Pfam Sulfotransfer_1 UniProtKB/TrEMBL
Superfamily-SCOP SSF52540 UniProtKB/TrEMBL
UniProt A0A8C2W6Q3 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-08-16 Sult4a1  sulfotransferase family 4A member 1    sulfotransferase family 4A, member 1  Symbol and/or name change 5135510 APPROVED