Slamf1 (signaling lymphocytic activation molecule family member 1) - Rat Genome Database

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Gene: Slamf1 (signaling lymphocytic activation molecule family member 1) Chinchilla lanigera
Analyze
Symbol: Slamf1
Name: signaling lymphocytic activation molecule family member 1
RGD ID: 9056695
Description: ENCODES a protein that exhibits cell adhesion mediator activity (ortholog); identical protein binding (ortholog); SH2 domain binding (ortholog); INVOLVED IN leukocyte chemotaxis involved in inflammatory response (ortholog); myeloid dendritic cell activation involved in immune response (ortholog); natural killer cell differentiation (ortholog); ASSOCIATED WITH autoimmune interstitial lung, joint, and kidney disease (ortholog); gastrointestinal stromal tumor (ortholog); genetic disease (ortholog); FOUND IN cell surface (ortholog); external side of plasma membrane (ortholog); phagocytic vesicle (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: signaling lymphocytic activation molecule
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495546812,334,307 - 12,370,334 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495546812,336,744 - 12,383,917 (-)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
Additional References at PubMed
PMID:22301074  


Genomics

Comparative Map Data
Slamf1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495546812,334,307 - 12,370,334 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495546812,336,744 - 12,383,917 (-)NCBIChiLan1.0ChiLan1.0
SLAMF1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381160,608,106 - 160,647,044 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1160,608,106 - 160,647,044 (-)EnsemblGRCh38hg38GRCh38
GRCh371160,577,896 - 160,616,834 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361158,846,513 - 158,883,493 (-)NCBINCBI36Build 36hg18NCBI36
Build 341157,392,961 - 157,429,942NCBI
Celera1133,648,634 - 133,685,810 (-)NCBICelera
Cytogenetic Map1q23.3NCBI
HuRef1131,936,108 - 131,973,275 (-)NCBIHuRef
CHM1_11161,975,242 - 162,012,420 (-)NCBICHM1_1
T2T-CHM13v2.01159,745,198 - 159,784,140 (-)NCBIT2T-CHM13v2.0
Slamf1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391171,594,700 - 171,628,752 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1171,594,695 - 171,628,752 (+)EnsemblGRCm39 Ensembl
GRCm381171,767,131 - 171,801,184 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1171,767,127 - 171,801,184 (+)EnsemblGRCm38mm10GRCm38
MGSCv371173,697,263 - 173,731,315 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361173,603,832 - 173,636,936 (+)NCBIMGSCv36mm8
Celera1174,623,305 - 174,657,749 (+)NCBICelera
Cytogenetic Map1H3NCBI
cM Map179.54NCBI
Slamf1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81386,802,708 - 86,837,890 (+)NCBIGRCr8
mRatBN7.21384,270,316 - 84,305,497 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1384,270,316 - 84,305,497 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1386,773,651 - 86,808,837 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01388,173,933 - 88,209,121 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01385,359,002 - 85,394,197 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01390,184,545 - 90,219,170 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1390,184,569 - 90,219,217 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.013101,446,883 - 101,481,363 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41387,769,569 - 87,804,963 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1383,882,850 - 83,917,969 (+)NCBICelera
Cytogenetic Map13q24NCBI
SLAMF1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2189,203,016 - 89,242,333 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1188,943,220 - 88,982,359 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01135,963,748 - 136,002,982 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11139,888,596 - 139,925,461 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1139,888,772 - 139,925,461 (-)Ensemblpanpan1.1panPan2
SLAMF1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13821,653,801 - 21,685,408 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3821,653,487 - 21,685,408 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3821,726,592 - 21,758,187 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03821,770,801 - 21,804,397 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3821,770,907 - 21,802,603 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13821,658,262 - 21,689,651 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03822,072,127 - 22,103,678 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03822,481,891 - 22,513,458 (+)NCBIUU_Cfam_GSD_1.0
Slamf1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244050586,661,580 - 6,698,569 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493674055,941 - 92,100 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493674055,941 - 92,100 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SLAMF1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl489,870,539 - 89,908,231 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1489,870,359 - 89,907,114 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2497,762,763 - 97,799,248 (+)NCBISscrofa10.2Sscrofa10.2susScr3
SLAMF1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1203,282,862 - 3,320,943 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl203,282,774 - 3,322,926 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660382,326,973 - 2,367,237 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Slamf1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_004624794627,906 - 661,257 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSCLAT00000023135   ⟹   ENSCLAP00000022921
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_00495546812,334,307 - 12,370,334 (-)Ensembl
RefSeq Acc Id: XM_005400212   ⟹   XP_005400269
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495546812,336,744 - 12,370,463 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013522533   ⟹   XP_013377987
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495546812,336,744 - 12,370,464 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013522535   ⟹   XP_013377989
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495546812,336,744 - 12,383,917 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005400269 (Get FASTA)   NCBI Sequence Viewer  
  XP_013377987 (Get FASTA)   NCBI Sequence Viewer  
  XP_013377989 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCLAP00000022921
  ENSCLAP00000022921.1
Reference Protein Sequences
RefSeq Acc Id: XP_005400269   ⟸   XM_005400212
- Peptide Label: isoform X2
- UniProtKB: A0A8C2W2A3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013377989   ⟸   XM_013522535
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_013377987   ⟸   XM_013522533
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: ENSCLAP00000022921   ⟸   ENSCLAT00000023135
Protein Domains
Ig-like


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000015725 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000023135 ENTREZGENE
  ENSCLAT00000023135.1 UniProtKB/TrEMBL
Gene3D-CATH 2.60.40.10 UniProtKB/TrEMBL
InterPro Ig-like_dom UniProtKB/TrEMBL
  Ig-like_fold UniProtKB/TrEMBL
  Sig_lymph_act_molc_N UniProtKB/TrEMBL
NCBI Gene Slamf1 ENTREZGENE
PANTHER SIGNALING LYMPHOCYTIC ACTIVATION MOLECULE UniProtKB/TrEMBL
  SIGNALING LYMPHOCYTIC ACTIVATION MOLECULE UniProtKB/TrEMBL
Pfam SLAM UniProtKB/TrEMBL
PROSITE IG_LIKE UniProtKB/TrEMBL
UniProt A0A8C2W2A3 ENTREZGENE, UniProtKB/TrEMBL