Cnst (consortin, connexin sorting protein) - Rat Genome Database

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Gene: Cnst (consortin, connexin sorting protein) Chinchilla lanigera
Analyze
Symbol: Cnst
Name: consortin, connexin sorting protein
RGD ID: 9056329
Description: ENCODES a protein that exhibits connexin binding (ortholog); phosphatase binding (ortholog); INVOLVED IN positive regulation of Golgi to plasma membrane protein transport (ortholog); ASSOCIATED WITH developmental and epileptic encephalopathy 54 (ortholog); gastrointestinal stromal tumor (ortholog); genetic disease (ortholog); FOUND IN intracellular membrane-bounded organelle (ortholog); plasma membrane (ortholog); protein-containing complex (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: consortin
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554069,473,398 - 9,529,996 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554069,441,441 - 9,531,792 (+)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Cnst
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554069,473,398 - 9,529,996 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554069,441,441 - 9,531,792 (+)NCBIChiLan1.0ChiLan1.0
CNST
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381246,566,456 - 246,668,595 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1246,566,444 - 246,668,595 (+)EnsemblGRCh38hg38GRCh38
GRCh371246,729,758 - 246,831,897 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361244,796,429 - 244,897,049 (+)NCBINCBI36Build 36hg18NCBI36
Celera1220,016,987 - 220,121,650 (+)NCBICelera
Cytogenetic Map1q44NCBI
HuRef1217,115,430 - 217,192,622 (+)NCBIHuRef
HuRef1217,197,253 - 217,218,839 (+)NCBIHuRef
CHM1_11248,001,936 - 248,104,308 (+)NCBICHM1_1
T2T-CHM13v2.01245,987,346 - 246,091,605 (+)NCBIT2T-CHM13v2.0
Cnst
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391179,374,009 - 179,455,043 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1179,373,935 - 179,455,043 (+)EnsemblGRCm39 Ensembl
GRCm381179,546,444 - 179,627,478 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1179,546,370 - 179,627,478 (+)EnsemblGRCm38mm10GRCm38
MGSCv371181,476,660 - 181,557,604 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361181,383,204 - 181,464,148 (+)NCBIMGSCv36mm8
Celera1186,617,507 - 186,698,192 (+)NCBICelera
Cytogenetic Map1H4NCBI
cM Map183.57NCBI
Cnst
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81393,828,694 - 93,905,497 (+)NCBIGRCr8
mRatBN7.21391,296,740 - 91,373,531 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1391,296,142 - 91,373,531 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.01397,838,325 - 97,915,131 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1397,838,361 - 97,913,082 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.013102,848,124 - 102,925,145 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41395,246,290 - 95,323,173 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1390,847,901 - 90,924,738 (+)NCBICelera
Cytogenetic Map13q26NCBI
CNST
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v212,457,842 - 2,565,803 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan112,675,362 - 2,782,529 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01222,184,419 - 222,291,611 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11227,538,079 - 227,761,748 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1227,563,246 - 227,759,310 (+)Ensemblpanpan1.1panPan2
CNST
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1737,278,479 - 37,400,847 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl737,328,609 - 37,399,390 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha736,760,942 - 36,883,324 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0737,110,754 - 37,233,436 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl737,110,562 - 37,233,434 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1736,950,992 - 37,073,299 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0736,958,988 - 37,081,302 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0737,227,926 - 37,350,341 (+)NCBIUU_Cfam_GSD_1.0
Cnst
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934450,250,159 - 50,347,933 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365264,397,357 - 4,497,850 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365264,399,886 - 4,497,185 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CNST
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1019,046,429 - 19,139,655 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11019,046,384 - 19,139,662 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21021,753,164 - 21,762,574 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CNST
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12583,592,133 - 83,706,703 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2583,595,348 - 83,706,697 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605585,869,816 - 85,986,093 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Cnst
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462477113,021,322 - 13,082,776 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462477113,012,415 - 13,115,092 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSCLAT00000011805   ⟹   ENSCLAP00000011667
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049554069,473,398 - 9,529,996 (+)Ensembl
RefSeq Acc Id: XM_013520444   ⟹   XP_013375898
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554069,441,441 - 9,531,792 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_013375898 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCLAP00000011667
  ENSCLAP00000011667.1
Reference Protein Sequences
RefSeq Acc Id: XP_013375898   ⟸   XM_013520444
- UniProtKB: A0A8C2VET4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSCLAP00000011667   ⟸   ENSCLAT00000011805
Protein Domains
Consortin C-terminal


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000008046 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000011805 ENTREZGENE
  ENSCLAT00000011805.1 UniProtKB/TrEMBL
InterPro Consortin UniProtKB/TrEMBL
  Consortin_C UniProtKB/TrEMBL
NCBI Gene Cnst ENTREZGENE
PANTHER CONSORTIN UniProtKB/TrEMBL
  PTHR28581 UniProtKB/TrEMBL
Pfam Consortin_C UniProtKB/TrEMBL
UniProt A0A8C2VET4 ENTREZGENE, UniProtKB/TrEMBL