Mrpl12 (mitochondrial ribosomal protein L12) - Rat Genome Database

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Gene: Mrpl12 (mitochondrial ribosomal protein L12) Chinchilla lanigera
Analyze
Symbol: Mrpl12
Name: mitochondrial ribosomal protein L12
RGD ID: 9055988
Description: INVOLVED IN mitochondrial transcription (ortholog); positive regulation of DNA-templated transcription (ortholog); ASSOCIATED WITH Animal Disease Models (ortholog); combined oxidative phosphorylation deficiency 45 (ortholog); COVID-19 (ortholog); FOUND IN mitochondrial large ribosomal subunit (ortholog); mitochondrial matrix (ortholog); mitochondrion (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: 39S ribosomal protein L12, mitochondrial
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555061,398,445 - 1,404,409 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049555061,400,439 - 1,404,409 (-)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Mrpl12
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555061,398,445 - 1,404,409 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049555061,400,439 - 1,404,409 (-)NCBIChiLan1.0ChiLan1.0
MRPL12
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381781,703,367 - 81,707,517 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1781,703,367 - 81,707,517 (+)EnsemblGRCh38hg38GRCh38
GRCh371779,670,397 - 79,674,547 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361777,280,812 - 77,284,953 (+)NCBINCBI36Build 36hg18NCBI36
Build 341777,280,811 - 77,284,953NCBI
Celera1776,315,553 - 76,319,694 (+)NCBICelera
Cytogenetic Map17q25.3NCBI
HuRef1775,116,299 - 75,120,450 (+)NCBIHuRef
CHM1_11779,756,619 - 79,760,775 (+)NCBICHM1_1
T2T-CHM13v2.01782,620,267 - 82,624,415 (+)NCBIT2T-CHM13v2.0
Mrpl12
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3911120,375,463 - 120,379,580 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl11120,375,439 - 120,379,891 (+)EnsemblGRCm39 Ensembl
GRCm3811120,484,637 - 120,488,754 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl11120,484,613 - 120,489,065 (+)EnsemblGRCm38mm10GRCm38
MGSCv3711120,345,983 - 120,350,068 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3611120,300,759 - 120,304,844 (+)NCBIMGSCv36mm8
Celera11132,220,001 - 132,224,086 (+)NCBICelera
Cytogenetic Map11E2NCBI
cM Map1184.18NCBI
Mrpl12
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr810106,256,746 - 106,261,249 (+)NCBIGRCr8
mRatBN7.210105,758,410 - 105,762,913 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl10105,758,410 - 105,762,913 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx10110,862,572 - 110,867,073 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.010110,325,603 - 110,330,104 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.010105,678,867 - 105,683,370 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.010109,658,032 - 109,662,535 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl10109,658,032 - 109,662,535 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.010109,251,300 - 109,255,803 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.410109,870,160 - 109,874,664 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera10104,302,342 - 104,306,842 (+)NCBICelera
Cytogenetic Map10q32.3NCBI
MRPL12
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21998,293,308 - 98,297,555 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan117103,193,727 - 103,197,951 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01776,162,710 - 76,166,862 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11781,863,522 - 81,867,734 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1781,863,518 - 81,867,734 (+)Ensemblpanpan1.1panPan2
MRPL12
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.19493,536 - 498,154 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha91,095,712 - 1,100,406 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.091,087,000 - 1,091,703 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl91,085,859 - 1,091,645 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.191,111,962 - 1,116,653 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.091,238,549 - 1,243,249 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.091,317,578 - 1,322,281 (-)NCBIUU_Cfam_GSD_1.0
Mrpl12
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244056021,105,214 - 1,110,096 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365945,301,866 - 5,305,362 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365945,301,846 - 5,305,362 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
MRPL12
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl121,200,461 - 1,203,822 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1121,200,458 - 1,203,817 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
MRPL12
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11673,633,786 - 73,639,142 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1673,633,918 - 73,638,902 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366607745,042,518 - 45,047,078 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Mrpl12
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462480110,635,802 - 10,639,697 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462480110,635,597 - 10,639,995 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


RefSeq Acc Id: ENSCLAT00000018794   ⟹   ENSCLAP00000018611
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049555061,398,445 - 1,404,409 (-)Ensembl
RefSeq Acc Id: XM_005407262   ⟹   XP_005407319
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049555061,400,439 - 1,404,409 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005407319 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCLAP00000018611
  ENSCLAP00000018611.1
RefSeq Acc Id: XP_005407319   ⟸   XM_005407262
- UniProtKB: A0A8C2VWD1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSCLAP00000018611   ⟸   ENSCLAT00000018794

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000012764 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000018794 ENTREZGENE
  ENSCLAT00000018794.1 UniProtKB/TrEMBL
Gene3D-CATH 1.20.5.710 UniProtKB/TrEMBL
  3.30.1390.10 UniProtKB/TrEMBL
InterPro Ribosomal_L7/12 UniProtKB/TrEMBL
  Ribosomal_L7/12_C/ClpS-like UniProtKB/TrEMBL
  Ribosomal_L7/L12_C UniProtKB/TrEMBL
  Ribosomal_L7/L12_oligo UniProtKB/TrEMBL
  Ribosomal_L7/L12_oligo_N_sf UniProtKB/TrEMBL
NCBI Gene Mrpl12 ENTREZGENE
PANTHER 39S RIBOSOMAL PROTEIN L12, MITOCHONDRIAL UniProtKB/TrEMBL
  PTHR45987 UniProtKB/TrEMBL
Pfam Ribosomal_L12 UniProtKB/TrEMBL
  Ribosomal_L12_N UniProtKB/TrEMBL
Superfamily-SCOP SSF48300 UniProtKB/TrEMBL
  SSF54736 UniProtKB/TrEMBL
UniProt A0A8C2VWD1 ENTREZGENE, UniProtKB/TrEMBL