Znf496 (zinc finger protein 496) - Rat Genome Database

Name: Znf496
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

Gene: Znf496 (zinc finger protein 496) Chinchilla lanigera

Analyze

Symbol:

Znf496

Name:

zinc finger protein 496

RGD ID:

9055811

Description:

ENCODES a protein that exhibits DNA binding (ortholog); INVOLVED IN positive regulation of DNA-templated transcription (ortholog); ASSOCIATED WITH developmental and epileptic encephalopathy 54 (ortholog); gastrointestinal stromal tumor (ortholog); genetic disease (ortholog); FOUND IN nucleus (ortholog)

Type:

protein-coding

RefSeq Status:

RGD Orthologs

Alliance Genes

More Info

more info ...

Latest Assembly:

ChiLan1.0 - Chinchilla ChiLan1.0 Assembly

Position:

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955581	541,088 - 558,907 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955581	543,526 - 559,514 (-)	NCBI	ChiLan1.0	ChiLan1.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

developmental and epileptic encephalopathy 54 (ISO)

gastrointestinal stromal tumor (ISO)

genetic disease (ISO)

parathyroid carcinoma (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

positive regulation of DNA-templated transcription (ISO)

Cellular Component

nucleus (ISO)

Molecular Function

DNA binding (ISO)

protein binding (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Transitive Annotation Pipeline	Automated assignment of GO, PW and RDO ISO annotations across species

Additional References at PubMed

PMID:22301074

Genomics

Comparative Map Data

Znf496
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955581	541,088 - 558,907 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955581	543,526 - 559,514 (-)	NCBI	ChiLan1.0	ChiLan1.0

ZNF496
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	1	247,297,415 - 247,331,867 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	1	247,297,412 - 247,331,867 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	1	247,460,717 - 247,495,169 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	1	245,530,245 - 245,561,668 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	1	243,789,663 - 243,821,086	NCBI
Celera	1	220,759,980 - 220,791,668 (-)	NCBI		Celera
Cytogenetic Map	1	q44	NCBI
HuRef	1	217,858,464 - 217,889,889 (-)	NCBI		HuRef
CHM1_1	1	248,735,859 - 248,767,200 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	1	246,730,535 - 246,764,981 (-)	NCBI		T2T-CHM13v2.0

Zkscan17
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	11	59,376,346 - 59,397,466 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	11	59,376,346 - 59,417,577 (-)	Ensembl		GRCm39 Ensembl
GRCm38	11	59,485,520 - 59,506,640 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	11	59,485,520 - 59,526,751 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	11	59,299,023 - 59,320,142 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	11	60,021,662 - 60,042,011 (-)	NCBI		MGSCv36	mm8
MGSCv36	11	59,301,757 - 59,322,106 (-)	NCBI		MGSCv36	mm8
Cytogenetic Map	11	B1.3	NCBI
cM Map	11	37.72	NCBI

Zfp496
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	10	44,768,463 - 44,787,386 (-)	NCBI		GRCr8
mRatBN7.2	10	44,268,923 - 44,287,795 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	10	44,268,928 - 44,287,651 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	10	48,963,277 - 48,982,032 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	10	48,453,634 - 48,472,389 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	10	43,957,247 - 43,976,001 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	10	45,833,259 - 45,852,130 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	10	45,833,264 - 45,851,984 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	10	45,589,179 - 45,608,737 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	10	45,789,046 - 45,807,920 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	10	45,804,204 - 45,821,075 (-)	NCBI
Celera	10	43,530,550 - 43,549,391 (-)	NCBI		Celera
Cytogenetic Map	10	q22	NCBI

ZNF496
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	1	1,728,242 - 1,762,052 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	1	1,998,013 - 2,035,750 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	1	222,929,917 - 222,965,629 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	1	228,384,527 - 228,422,404 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	1	228,384,527 - 228,422,390 (-)	Ensembl	panpan1.1		panPan2

ZNF496
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	8	169,247 - 196,996 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	8	171,476 - 196,647 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	8	195,084 - 222,848 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	8	217,090 - 244,793 (-)	NCBI		ROS_Cfam_1.0
UMICH_Zoey_3.1	8	160,025 - 187,713 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	8	122,029 - 149,810 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	8	254,470 - 282,162 (-)	NCBI		UU_Cfam_GSD_1.0

Znf496
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024407213	88,198,361 - 88,223,016 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936864	539,455 - 564,298 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936864	539,638 - 564,292 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

ZNF496
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	2	57,053,652 - 57,097,828 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	2	57,053,417 - 57,097,831 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	2	57,950,180 - 58,026,138 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

ZNF496
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	25	84,316,335 - 84,346,604 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	25	84,314,623 - 84,346,550 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666055	86,659,429 - 86,690,738 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Znf496
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624937	610,877 - 626,608 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624937	609,185 - 626,023 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_005414248	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_013509736	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AGCD01075677	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AGCD01075678	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	GBDJ01135290	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSCLAT00000000763 ⟹ ENSCLAP00000000728

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0 Ensembl	NW_004955581	541,088 - 558,907 (-)	Ensembl

RefSeq Acc Id:

XM_005414248 ⟹ XP_005414305

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0	NW_004955581	543,526 - 559,514 (-)	NCBI

Sequence:

show sequence

GGCCCGCGGCCCCTGCACTGCTGACTGCCTGCGCGGACTGCTGCGGCCGCGGCCCTGCTGCTGC
CCCGTGGGTGCGGCTGGGTGTGTGCCCAACCGCTCGGACGCCTGTGCTGGCCAGGGGCCCCCGA
GTGTCCTTCTTCTGACAGGGCGGGACTTCGAAGTGTGGATGCTGGAGACCAGGTTGAAGGGCAA
GGTTATTTGTACGCATATGATAGGAGTGCTGGTGCTCCCTGTCATCCCAGCACTCTGGGAGGCT
GAGGCAGGACGATTGCAAGTTTGAGCACAACCTGGGCAACTTGGTGGCCTAGCGAGATCTTCTC
TTGAAAATGAATGTTAGGTCTAGGTTTGTAGCTCACCGTGAAGATCCTGGGTTCAGTCCCACTG
CGGCAGGGAGCGAGGGTATGATCAGGACTCTTCTCAGCGGTAGAGCCGCGCAGGGCGGGAGGCT
TCTCTGGAAGCACTGGCGTTTCCGACAGGTGTGGCTGGTTTCTGCGGGTGACCTGGGTGCAGCT
GTCTTGGGGACAGTGCCAGCCCCTCCTGCACCACCCGCAGAGTCCGTCCCTGGGGAGCCTTGCG
GCCTTCCACGCGCTTGTCCTTGCCCTTCCAGCTAACTTTATCAAGAGTGCAGAGCCAGAGCAGG
GACCTCGGCTCGGAAGCCACAGGACCGTGGCCTGCTCGGCACATCTGCCCCGCGCGGGTCTCCC
GAGGCCCTGGCCCCAAGCCCTGTGCCCCCGCGTGCTGGCCCCCCAGGAGAGCGAGGAGCCCCGG
AAGATGAGGAGCCCCCCTGGAGAGAAGGCCGGCCTGCCGGGAGAGCCCCCCAGCCCCGAGTCCT
CGCGCCGCCTGTTCCGCCGCTTCCGCTACCAGGAGGCGGCCGGGCCCCGAGAAGCGCTGCGCCG
GCTGTGGGACCTGTGCCGCGGGTGGCTGCGGCTGGAGCGCCATACCAAGGAGCAGATCCTGGAG
CTGCTGGTGCTGGAGCAGTTCCTGGCCATCCTGCCGCGCGAGGTGCAGGCCTGGGTGCGCGCCC
AGGAGCCCGAGAGTGGCGAGCAGGCTGTGGCCGCCGTCGAGGCGCTGGAGCGGGAGCCTGGGAG
GCCGTGGCAGTGGCGCAAGCACTGTGAGGACCCCGTGGTGATTGATGACGGGGAAGGCCCTCCT
GACCTGGGCCAGGAGCAGGACCGCCTGCCCGCGGATGTCCTCAGCGACCCTGCGAAGAGCCAGG
ACGCCCAGCCTGTGGCCCTGGCCCCCGGCCTGGGCCTCCTCAGCCGATCTCCCAGCCAGCTCTG
CGAGGGCCCAGCGCCACAGGACGCCTGCCTTCTGCAGGAGGACGGTGCAGGGGACACACAGCAG
GTGGCTGCCTTCCCACTGCCTGCGACCCGTGCGTCCCCGTTTAAGGACATGATCTTGTGCTTCT
CTGAAGAGGACTGGTCCCTCCTCGACCCCGCGCAGACCGGCTTCTACGGGGAGTTCATCATCGG
CGAGGACTGCGGGGTCTCCGTGCCCCCGGACGACCCCGAGGCTCAGCCAGACCTCTCGCCGGGG
GAGGACGGCGAGCCCCGGGTCCCGGAGCTGCCGGAGCTGCCGGAGCTGCAGGGCAGGGAGGCGT
CTCAGGCTCCCTCTGTGGACTTGCCCGGTCTGCAGCCGTTCCCCGCGGAGGAGAGGAGGCGGTG
GGAGGAGCTGCAGGTGCCCGAGTTCCAGGCCAGCCCGGTGCCCGCCCTCACTCAGAGCGCCTGC
CCAGCTGCGCCCAACCCCGCACCCCTGGAGGACGGCTTGGAGGAGGAGGTGACCATCGAGATCG
TGCTGTCGGGTTCGGGCGACGAGGAGGAGCGCGGCACGGGCGCGCGTGGGGCCCAGGCTAAGGC
GTACGTGTGCCCGCGCTGCGGCAAGGCCTTCCGTTGGCGGGTCAACTTTGTGCGTCACCTGCGC
AGCGGCGACGGCGAAGGCGCGGCCGGGCACCGCGGGACGCACGAAGCTCCCAGGCCGCACCGTT
GTGGGGCCTGCGGGCGCAGCTTCCGGCTGGCGGCACACCTGCTAGCGCACCGCCGCGCGCACCT
GCGGCCAGGGGACAGGGACGCCAAGGACCCGGGGGATGGGGACAGGCCCGGCGCGCGCCGCCGC
GACCTCCCGCAGGACCGCGCGCTGCGCTGCCGCTACTGCGCCAAGAGCTTCGGGCAGAACTGCG
GGCTCCTTCGCCACGAGCGCCTGCACATGAAGCGCCGCTCCAAGCAGGCGCTCAACTCCTACTG
AGTGGCCGGCCCCGCCCACAGTCTGCCAGCGCTTCGGCGCGGGAAGCAGCGGCAGTGGTCGTGC
CCCTCACGGACCCTCCCAGGGCGCCCCAGGCCCTGCAAGGGGATGGCGGCCTCCGTGGCATGGG
GTTACCAGCTGGCCCACTGCCGGACCCGGAGGGCCGTGGCAGGACAGGGCCTTCGTGTCCCGTA
CCCGGGCAGCCCAAGGGCTGTGGCTACCAGCGGGCCAGCGCCATGGCTGCTCCTAAGTGCGATA
AAAGATAGCTCAGTTGTGGTTTTGGGGTTTTTTTTGGGTCTTGGTTTGTTTTTGTTTTTTGCAT
CACTGGGAATTGAGCCAGGGTCTTCCCACTGTGCTACATCCACCACACACACCTGCGCGTTTCT
GGTTTTCTGTTTTAACTTTGAAACGGGGATCTAAGTTGTCCAGGCTGGGCTCAAGCTTGAGATC
CTCCTACCTCAGCCTCGCAGGGTGGTGGGATGACGGCCATGCACCACCACACCCAGCTGGAGTT
CCCATTTTAAGCTCTTGCACGCTGGCCTGCTCTTTCCATTGCAGTGAGGAGGTTACATGTAGGT
GGGGCAGCAGCCGAGGTCATCTGAGGGACACTGAAGGTCCCCGGACTCTAGGAACTCAGAGCTT
GGCTGGGAGGGTCTCTGGGTCCCGTGAGCTCTTCTCTGTCAGAATCCCATGCCAGCATGTGTTC
CCTAAGGCTGGCGCAGCTGCCAGCAGAGTCCTCTCCATTCCTGGCAGGCGTGAGGGAGCCGTGG
GTGCACATCCTCGGCCTGTGGGCATGCGTATCTGCATGTGGGAACACAGGCCTCCTCCTCTGCC
CTGCTGTCCGTATAGCTGTCCCCGGCTCCCTTGCATAAAGGACACCAGCCCTGGGCTTCACGCC
ATCCCGTCTGTGTGCCTGTGACTGCCGGGATCTGCGGTGACTGTCCAAAACAAGTCTCCACGGT
GTCCTGGGGACACAGCACCGCTGCCTGCACCCGCAGCCTGGGCAGTGACACTTGGAACCAGTCC
TGGGACACTGGCCGTGGGGCTTCGGAGCTGCAGACGGCCTGGGAGGCTGCTCCTCAGCATCACA
TGCCTGGTAGACAGCAAGCCTGCATCAGGTGCTCCTGGTCACCCACGTGGTTTTCACATCCAAT
AAAAGCTATCTTTTGTTTTGCA

hide sequence

RefSeq Acc Id:

XM_013509736 ⟹ XP_013365190

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0	NW_004955581	543,526 - 559,514 (-)	NCBI

Sequence:

show sequence

GGCCCGCGGCCCCTGCACTGCTGACTGCCTGCGCGGACTGCTGCGGCCGCGGCCCTGCTGCTGC
CCCGTGGGTGCGGCTGGGTGTGTGCCCAACCGCTCGGACGCCTGTGCTGGCCAGGGGCCCCCGA
GTGTCCTTCTTCTGACAGGGCGGGACTTCGAAGTGTGGATGCTGGAGACCAGGTTGAAGGGCAA
GGTTATTTGTACGCATATGATAGGAGTGCTGGTGCTCCCTGTCATCCCAGCACTCTGGGAGGCT
GAGGCAGGACGATTGCAAGTTTGAGCACAACCTGGGCAACTTGGTGGCCTAGCGAGATCTTCTC
TTGAAAATGAATGTTAGGTCTAGGTTTGTAGCTCACCGTGAAGATCCTGGGTTCAGTCCCACTG
CGGCAGGGAGCGAGGGTATGATCAGGACTCTTCTCAGCGGTAGAGCCGCGCAGGGCGGGAGGCT
TCTCTGGAAGCACTGGCGTTTCCGACAGGTGTGGCTGGTTTCTGCGGGTGACCTGGGTGCAGCT
GTCTTGGGGACAGTGCCAGCCCCTCCTGCACCACCCGCAGAGTCCGTCCCTGGGGAGCCTTGCG
GCCTTCCACGCGCTTGTCCTTGCCCTTCCAGCTAACTTTATCAAGAGTGCAGAGCCAGAGCAGG
GACCTCGGCTCGGAAGCCACAGGACCGTGGCCTGCTCGGCACATCTGCCCCGCGCGGGTCTCCC
GAGGCCCTGGCCCCAAGGGTCGTCTCCTGCCGCTGACCCCCATCAAACCCCATCATGCCCACAG
CCCTGTGCCCCCGCGTGCTGGCCCCCCAGGAGAGCGAGGAGCCCCGGAAGATGAGGAGCCCCCC
TGGAGAGAAGGCCGGCCTGCCGGGAGAGCCCCCCAGCCCCGAGTCCTCGCGCCGCCTGTTCCGC
CGCTTCCGCTACCAGGAGGCGGCCGGGCCCCGAGAAGCGCTGCGCCGGCTGTGGGACCTGTGCC
GCGGGTGGCTGCGGCTGGAGCGCCATACCAAGGAGCAGATCCTGGAGCTGCTGGTGCTGGAGCA
GTTCCTGGCCATCCTGCCGCGCGAGGTGCAGGCCTGGGTGCGCGCCCAGGAGCCCGAGAGTGGC
GAGCAGGCTGTGGCCGCCGTCGAGGCGCTGGAGCGGGAGCCTGGGAGGCCGTGGCAGTGGCGCA
AGCACTGTGAGGACCCCGTGGTGATTGATGACGGGGAAGGCCCTCCTGACCTGGGCCAGGAGCA
GGACCGCCTGCCCGCGGATGTCCTCAGCGACCCTGCGAAGAGCCAGGACGCCCAGCCTGTGGCC
CTGGCCCCCGGCCTGGGCCTCCTCAGCCGATCTCCCAGCCAGCTCTGCGAGGGCCCAGCGCCAC
AGGACGCCTGCCTTCTGCAGGAGGACGGTGCAGGGGACACACAGCAGGTGGCTGCCTTCCCACT
GCCTGCGACCCGTGCGTCCCCGTTTAAGGACATGATCTTGTGCTTCTCTGAAGAGGACTGGTCC
CTCCTCGACCCCGCGCAGACCGGCTTCTACGGGGAGTTCATCATCGGCGAGGACTGCGGGGTCT
CCGTGCCCCCGGACGACCCCGAGGCTCAGCCAGACCTCTCGCCGGGGGAGGACGGCGAGCCCCG
GGTCCCGGAGCTGCCGGAGCTGCCGGAGCTGCAGGGCAGGGAGGCGTCTCAGGCTCCCTCTGTG
GACTTGCCCGGTCTGCAGCCGTTCCCCGCGGAGGAGAGGAGGCGGTGGGAGGAGCTGCAGGTGC
CCGAGTTCCAGGCCAGCCCGGTGCCCGCCCTCACTCAGAGCGCCTGCCCAGCTGCGCCCAACCC
CGCACCCCTGGAGGACGGCTTGGAGGAGGAGGTGACCATCGAGATCGTGCTGTCGGGTTCGGGC
GACGAGGAGGAGCGCGGCACGGGCGCGCGTGGGGCCCAGGCTAAGGCGTACGTGTGCCCGCGCT
GCGGCAAGGCCTTCCGTTGGCGGGTCAACTTTGTGCGTCACCTGCGCAGCGGCGACGGCGAAGG
CGCGGCCGGGCACCGCGGGACGCACGAAGCTCCCAGGCCGCACCGTTGTGGGGCCTGCGGGCGC
AGCTTCCGGCTGGCGGCACACCTGCTAGCGCACCGCCGCGCGCACCTGCGGCCAGGGGACAGGG
ACGCCAAGGACCCGGGGGATGGGGACAGGCCCGGCGCGCGCCGCCGCGACCTCCCGCAGGACCG
CGCGCTGCGCTGCCGCTACTGCGCCAAGAGCTTCGGGCAGAACTGCGGGCTCCTTCGCCACGAG
CGCCTGCACATGAAGCGCCGCTCCAAGCAGGCGCTCAACTCCTACTGAGTGGCCGGCCCCGCCC
ACAGTCTGCCAGCGCTTCGGCGCGGGAAGCAGCGGCAGTGGTCGTGCCCCTCACGGACCCTCCC
AGGGCGCCCCAGGCCCTGCAAGGGGATGGCGGCCTCCGTGGCATGGGGTTACCAGCTGGCCCAC
TGCCGGACCCGGAGGGCCGTGGCAGGACAGGGCCTTCGTGTCCCGTACCCGGGCAGCCCAAGGG
CTGTGGCTACCAGCGGGCCAGCGCCATGGCTGCTCCTAAGTGCGATAAAAGATAGCTCAGTTGT
GGTTTTGGGGTTTTTTTTGGGTCTTGGTTTGTTTTTGTTTTTTGCATCACTGGGAATTGAGCCA
GGGTCTTCCCACTGTGCTACATCCACCACACACACCTGCGCGTTTCTGGTTTTCTGTTTTAACT
TTGAAACGGGGATCTAAGTTGTCCAGGCTGGGCTCAAGCTTGAGATCCTCCTACCTCAGCCTCG
CAGGGTGGTGGGATGACGGCCATGCACCACCACACCCAGCTGGAGTTCCCATTTTAAGCTCTTG
CACGCTGGCCTGCTCTTTCCATTGCAGTGAGGAGGTTACATGTAGGTGGGGCAGCAGCCGAGGT
CATCTGAGGGACACTGAAGGTCCCCGGACTCTAGGAACTCAGAGCTTGGCTGGGAGGGTCTCTG
GGTCCCGTGAGCTCTTCTCTGTCAGAATCCCATGCCAGCATGTGTTCCCTAAGGCTGGCGCAGC
TGCCAGCAGAGTCCTCTCCATTCCTGGCAGGCGTGAGGGAGCCGTGGGTGCACATCCTCGGCCT
GTGGGCATGCGTATCTGCATGTGGGAACACAGGCCTCCTCCTCTGCCCTGCTGTCCGTATAGCT
GTCCCCGGCTCCCTTGCATAAAGGACACCAGCCCTGGGCTTCACGCCATCCCGTCTGTGTGCCT
GTGACTGCCGGGATCTGCGGTGACTGTCCAAAACAAGTCTCCACGGTGTCCTGGGGACACAGCA
CCGCTGCCTGCACCCGCAGCCTGGGCAGTGACACTTGGAACCAGTCCTGGGACACTGGCCGTGG
GGCTTCGGAGCTGCAGACGGCCTGGGAGGCTGCTCCTCAGCATCACATGCCTGGTAGACAGCAA
GCCTGCATCAGGTGCTCCTGGTCACCCACGTGGTTTTCACATCCAATAAAAGCTATCTTTTGTT
TTGCA

hide sequence

Protein Sequences


Protein RefSeqs	XP_005414305	(Get FASTA)	NCBI Sequence Viewer
	XP_013365190	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSCLAP00000000728
	ENSCLAP00000000728.1

RefSeq Acc Id:

XP_005414305 ⟸ XM_005414248

- Peptide Label:

isoform X2

- Sequence:

show sequence

MRSPPGEKAGLPGEPPSPESSRRLFRRFRYQEAAGPREALRRLWDLCRGWLRLERHTKEQILEL
LVLEQFLAILPREVQAWVRAQEPESGEQAVAAVEALEREPGRPWQWRKHCEDPVVIDDGEGPPD
LGQEQDRLPADVLSDPAKSQDAQPVALAPGLGLLSRSPSQLCEGPAPQDACLLQEDGAGDTQQV
AAFPLPATRASPFKDMILCFSEEDWSLLDPAQTGFYGEFIIGEDCGVSVPPDDPEAQPDLSPGE
DGEPRVPELPELPELQGREASQAPSVDLPGLQPFPAEERRRWEELQVPEFQASPVPALTQSACP
AAPNPAPLEDGLEEEVTIEIVLSGSGDEEERGTGARGAQAKAYVCPRCGKAFRWRVNFVRHLRS
GDGEGAAGHRGTHEAPRPHRCGACGRSFRLAAHLLAHRRAHLRPGDRDAKDPGDGDRPGARRRD
LPQDRALRCRYCAKSFGQNCGLLRHERLHMKRRSKQALNSY

hide sequence

RefSeq Acc Id:	XP_013365190 ⟸ XM_013509736
- Peptide Label:	isoform X1
- UniProtKB:	A0A8C2UJ08 (UniProtKB/TrEMBL)
- Sequence:	show sequence MPTALCPRVLAPQESEEPRKMRSPPGEKAGLPGEPPSPESSRRLFRRFRYQEAAGPREALRRLW DLCRGWLRLERHTKEQILELLVLEQFLAILPREVQAWVRAQEPESGEQAVAAVEALEREPGRPW QWRKHCEDPVVIDDGEGPPDLGQEQDRLPADVLSDPAKSQDAQPVALAPGLGLLSRSPSQLCEG PAPQDACLLQEDGAGDTQQVAAFPLPATRASPFKDMILCFSEEDWSLLDPAQTGFYGEFIIGED CGVSVPPDDPEAQPDLSPGEDGEPRVPELPELPELQGREASQAPSVDLPGLQPFPAEERRRWEE LQVPEFQASPVPALTQSACPAAPNPAPLEDGLEEEVTIEIVLSGSGDEEERGTGARGAQAKAYV CPRCGKAFRWRVNFVRHLRSGDGEGAAGHRGTHEAPRPHRCGACGRSFRLAAHLLAHRRAHLRP GDRDAKDPGDGDRPGARRRDLPQDRALRCRYCAKSFGQNCGLLRHERLHMKRRSKQALNSY hide sequence

RefSeq Acc Id:

ENSCLAP00000000728 ⟸ ENSCLAT00000000763

Protein Domains

C2H2-type SCAN box

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSCLAG00000000579	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSCLAT00000000763	ENTREZGENE
	ENSCLAT00000000763.1	UniProtKB/TrEMBL
Gene3D-CATH	1.10.4020.10	UniProtKB/TrEMBL
	Classic Zinc Finger	UniProtKB/TrEMBL
InterPro	KRAB	UniProtKB/TrEMBL
	KRAB_dom_sf	UniProtKB/TrEMBL
	SCAN_dom	UniProtKB/TrEMBL
	SCAN_sf	UniProtKB/TrEMBL
	Znf_C2H2_sf	UniProtKB/TrEMBL
	Znf_C2H2_type	UniProtKB/TrEMBL
NCBI Gene	Znf496	ENTREZGENE
PANTHER	PROTEIN ZBED8-RELATED	UniProtKB/TrEMBL
	SCAN DOMAIN-CONTAINING PROTEIN 3	UniProtKB/TrEMBL
Pfam	KRAB	UniProtKB/TrEMBL
	SCAN	UniProtKB/TrEMBL
	zf-C2H2	UniProtKB/TrEMBL
PROSITE	SCAN_BOX	UniProtKB/TrEMBL
	ZINC_FINGER_C2H2_1	UniProtKB/TrEMBL
	ZINC_FINGER_C2H2_2	UniProtKB/TrEMBL
SMART	SCAN	UniProtKB/TrEMBL
	ZnF_C2H2	UniProtKB/TrEMBL
Superfamily-SCOP	Retrovirus capsid dimerization domain-like	UniProtKB/TrEMBL
	SSF109640	UniProtKB/TrEMBL
	SSF57667	UniProtKB/TrEMBL
UniProt	A0A8C2UJ08	ENTREZGENE, UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - ClinVar