Tsfm (Ts translation elongation factor, mitochondrial) - Rat Genome Database

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Gene: Tsfm (Ts translation elongation factor, mitochondrial) Chinchilla lanigera
Analyze
Symbol: Tsfm
Name: Ts translation elongation factor, mitochondrial
RGD ID: 9055678
Description: INVOLVED IN regulation of mitochondrial translation (ortholog); ASSOCIATED WITH combined oxidative phosphorylation deficiency (ortholog); combined oxidative phosphorylation deficiency 3 (ortholog); dilated cardiomyopathy (ortholog); FOUND IN mitochondrion (ortholog); nucleoplasm (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: elongation factor Ts, mitochondrial
RGD Orthologs
Human
Mouse
Rat
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554585,489,630 - 5,498,723 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554585,489,551 - 5,498,572 (+)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
2. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Tsfm
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554585,489,630 - 5,498,723 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554585,489,551 - 5,498,572 (+)NCBIChiLan1.0ChiLan1.0
TSFM
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381257,782,787 - 57,802,856 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1257,782,761 - 57,808,071 (+)EnsemblGRCh38hg38GRCh38
GRCh371258,176,570 - 58,196,639 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361256,462,826 - 56,476,784 (+)NCBINCBI36Build 36hg18NCBI36
Build 341256,462,825 - 56,476,784NCBI
Celera1257,834,139 - 57,854,561 (+)NCBICelera
Cytogenetic Map12q14.1NCBI
HuRef1255,213,385 - 55,233,606 (+)NCBIHuRef
CHM1_11258,144,334 - 58,164,430 (+)NCBICHM1_1
T2T-CHM13v2.01257,751,155 - 57,771,225 (+)NCBIT2T-CHM13v2.0
Tsfm
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3910126,858,201 - 126,866,683 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl10126,847,441 - 126,866,709 (-)EnsemblGRCm39 Ensembl
GRCm3810127,022,332 - 127,030,814 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl10127,011,572 - 127,030,840 (-)EnsemblGRCm38mm10GRCm38
MGSCv3710126,459,388 - 126,467,870 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3610126,425,281 - 126,433,763 (-)NCBIMGSCv36mm8
Celera10129,414,270 - 129,422,752 (-)NCBICelera
Cytogenetic Map10D3NCBI
cM Map1074.5NCBI
Tsfm
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8764,714,330 - 64,750,106 (-)NCBIGRCr8
mRatBN7.2762,828,997 - 62,864,784 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl762,845,488 - 62,864,769 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx764,734,788 - 64,742,469 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0766,937,189 - 66,944,870 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0766,738,468 - 66,746,124 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0770,311,948 - 70,319,389 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl770,311,950 - 70,319,346 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0770,489,453 - 70,495,163 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera759,989,489 - 59,997,397 (-)NCBICelera
Cytogenetic Map7q22NCBI
LOC100682701
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1284,956,329 - 5,067,024 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha285,189,710 - 5,298,772 (+)NCBIDog10K_Boxer_Tasha
Tsfm
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494556,940,391 - 56,960,829 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366461,908,304 - 1,930,287 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366461,919,326 - 1,936,694 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TSFM
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl523,072,808 - 23,097,915 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1523,073,087 - 23,087,029 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
TSFM
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11153,696,197 - 53,714,949 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1153,696,228 - 53,708,957 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666037192,246,552 - 192,265,298 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Tsfm
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462480210,153,124 - 10,165,614 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462480210,154,581 - 10,165,614 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSCLAT00000013504   ⟹   ENSCLAP00000013352
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049554585,489,630 - 5,498,723 (+)Ensembl
RefSeq Acc Id: XM_005397417   ⟹   XP_005397474
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554585,489,553 - 5,498,572 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005397418   ⟹   XP_005397475
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554585,489,551 - 5,498,124 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005397474 (Get FASTA)   NCBI Sequence Viewer  
  XP_005397475 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCLAP00000013352
  ENSCLAP00000013352.1
Reference Protein Sequences
RefSeq Acc Id: XP_005397475   ⟸   XM_005397418
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_005397474   ⟸   XM_005397417
- Peptide Label: isoform X1
- UniProtKB: A0A8C2VEB9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSCLAP00000013352   ⟸   ENSCLAT00000013504
Protein Domains
Translation elongation factor EFTs/EF1B


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000009226 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000013504 ENTREZGENE
  ENSCLAT00000013504.1 UniProtKB/TrEMBL
Gene3D-CATH 3.30.479.20 UniProtKB/TrEMBL
  DNA helicase RuvA subunit, C-terminal domain UniProtKB/TrEMBL
InterPro EF-Ts_dimer_sf UniProtKB/TrEMBL
  Transl_elong_EFTs/EF1B UniProtKB/TrEMBL
  Transl_elong_EFTs/EF1B_dimer UniProtKB/TrEMBL
  Transl_elong_Ts_CS UniProtKB/TrEMBL
  UBA-like_sf UniProtKB/TrEMBL
NCBI Gene Tsfm ENTREZGENE
PANTHER ELONGATION FACTOR TS, MITOCHONDRIAL UniProtKB/TrEMBL
  PTHR11741 UniProtKB/TrEMBL
Pfam EF_TS UniProtKB/TrEMBL
PROSITE EF_TS_2 UniProtKB/TrEMBL
Superfamily-SCOP SSF46934 UniProtKB/TrEMBL
  SSF54713 UniProtKB/TrEMBL
UniProt A0A8C2VEB9 ENTREZGENE, UniProtKB/TrEMBL