Sort1 (sortilin 1) - Rat Genome Database

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Gene: Sort1 (sortilin 1) Chinchilla lanigera
Analyze
Symbol: Sort1
Name: sortilin 1
RGD ID: 9054629
Description: ENCODES a protein that exhibits enzyme binding (ortholog); nerve growth factor binding (ortholog); nerve growth factor receptor activity (ortholog); INVOLVED IN endocytosis (ortholog); endosome to lysosome transport (ortholog); endosome transport via multivesicular body sorting pathway (ortholog); ASSOCIATED WITH autistic disorder (ortholog); cardiovascular system disease (ortholog); cholestasis (ortholog); FOUND IN cell surface (ortholog); clathrin-coated pit (ortholog); clathrin-coated vesicle (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Also known as: sortilin
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
NCBI Annotation Information: Annotation category: partial on reference assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495543512,730,270 - 12,819,029 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495543512,725,952 - 12,819,280 (-)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

References


Genomics

Comparative Map Data
Sort1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495543512,730,270 - 12,819,029 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495543512,725,952 - 12,819,280 (-)NCBIChiLan1.0ChiLan1.0
SORT1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl1109,309,568 - 109,397,918 (-)EnsemblGRCh38hg38GRCh38
GRCh381109,309,575 - 109,397,940 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh371109,852,197 - 109,940,540 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361109,653,715 - 109,742,086 (-)NCBINCBI36hg18NCBI36
Build 341109,564,233 - 109,652,605NCBI
Celera1108,121,561 - 108,209,921 (-)NCBI
Cytogenetic Map1p13.3NCBI
HuRef1107,745,442 - 107,833,803 (-)NCBIHuRef
CHM1_11109,967,032 - 110,055,404 (-)NCBICHM1_1
Sort1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm393108,191,272 - 108,268,835 (+)NCBIGRCm39mm39
GRCm39 Ensembl3108,191,398 - 108,268,827 (+)Ensembl
GRCm383108,283,974 - 108,361,519 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl3108,284,082 - 108,361,511 (+)EnsemblGRCm38mm10GRCm38
MGSCv373108,087,050 - 108,164,429 (+)NCBIGRCm37mm9NCBIm37
MGSCv363108,412,188 - 108,489,567 (+)NCBImm8
Celera3110,641,971 - 110,695,148 (+)NCBICelera
Cytogenetic Map3F3NCBI
Sort1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.22195,924,033 - 196,002,354 (+)NCBI
Rnor_6.0 Ensembl2211,078,334 - 211,156,312 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.02211,078,092 - 211,156,312 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.02230,546,773 - 230,626,278 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42203,853,009 - 203,931,559 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.12203,816,049 - 203,890,296 (+)NCBI
Celera2188,569,202 - 188,647,900 (+)NCBICelera
Cytogenetic Map2q34NCBI
SORT1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11110,850,311 - 110,888,690 (-)NCBIpanpan1.1PanPan1.1panPan2
Mhudiblu_PPA_v01111,687,119 - 111,775,339 (-)NCBIMhudiblu_PPA_v0panPan3
SORT1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1642,454,091 - 42,521,251 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl642,453,942 - 42,516,740 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha645,228,326 - 45,295,415 (+)NCBI
ROS_Cfam_1.0642,784,113 - 42,848,096 (+)NCBI
UMICH_Zoey_3.1642,517,324 - 42,583,603 (+)NCBI
UNSW_CanFamBas_1.0642,474,716 - 42,541,652 (+)NCBI
UU_Cfam_GSD_1.0642,909,755 - 42,976,918 (+)NCBI
Sort1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505819,210,972 - 19,281,426 (+)NCBI
SpeTri2.0NW_004936704832,651 - 901,658 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SORT1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl4110,720,100 - 110,789,702 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.14110,721,110 - 110,791,406 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.24121,230,024 - 121,289,561 (+)NCBISscrofa10.2Sscrofa10.2susScr3
SORT1
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12024,150,210 - 24,235,518 (+)NCBI
ChlSab1.1 Ensembl2024,150,300 - 24,239,503 (+)Ensembl
Sort1
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247725,044,948 - 5,123,300 (-)NCBI


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSCLAT00000007077   ⟹   ENSCLAP00000006965
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_00495543512,730,270 - 12,819,029 (-)Ensembl
RefSeq Acc Id: ENSCLAT00000007078   ⟹   ENSCLAP00000006966
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_00495543512,730,270 - 12,819,029 (-)Ensembl
RefSeq Acc Id: XM_013516443   ⟹   XP_013371897
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495543512,725,952 - 12,819,280 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013516444   ⟹   XP_013371898
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495543512,725,952 - 12,819,280 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_013371897 (Get FASTA)   NCBI Sequence Viewer  
  XP_013371898 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_013371898   ⟸   XM_013516444
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_013371897   ⟸   XM_013516443
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: ENSCLAP00000006966   ⟸   ENSCLAT00000007078
RefSeq Acc Id: ENSCLAP00000006965   ⟸   ENSCLAT00000007077


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000004904 Ensembl, ENTREZGENE
Ensembl Protein ENSCLAP00000006965 ENTREZGENE
  ENSCLAP00000006966 ENTREZGENE
Ensembl Transcript ENSCLAT00000007077 ENTREZGENE
  ENSCLAT00000007078 ENTREZGENE
NCBI Gene Sort1 ENTREZGENE