Slc25a30 (solute carrier family 25 member 30)

Gene: Slc25a30 (solute carrier family 25 member 30) Chinchilla lanigera

Analyze

Symbol:

Slc25a30

Name:

solute carrier family 25 member 30

RGD ID:

9053529

Description:

ENCODES a protein that exhibits solute:inorganic anion antiporter activity (ortholog); INVOLVED IN inorganic anion transport (ortholog); ASSOCIATED WITH Experimental Liver Cirrhosis (ortholog); genetic disease (ortholog); FOUND IN mitochondrion (ortholog)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

kidney mitochondrial carrier protein 1; solute carrier family 25, member 30

RGD Orthologs

Alliance Genes

More Info

more info ...

Latest Assembly:

ChiLan1.0 - Chinchilla ChiLan1.0 Assembly

Position:

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955518	3,181,368 - 3,203,061 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955518	3,182,085 - 3,203,061 (+)	NCBI	ChiLan1.0	ChiLan1.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Experimental Liver Cirrhosis (ISO)

genetic disease (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

inorganic anion transport (ISO)

Cellular Component

mitochondrion (ISO)

Molecular Function

protein binding (ISO)

solute:inorganic anion antiporter activity (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Transitive Annotation Pipeline	Automated assignment of GO, PW and RDO ISO annotations across species

Additional References at PubMed

PMID:22301074

Genomics

Comparative Map Data

Slc25a30
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955518	3,181,368 - 3,203,061 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955518	3,182,085 - 3,203,061 (+)	NCBI	ChiLan1.0	ChiLan1.0

SLC25A30
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	13	45,393,316 - 45,434,016 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	13	45,393,316 - 45,418,455 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	13	45,967,451 - 45,992,508 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	13	44,868,044 - 44,890,515 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	13	27,022,161 - 27,047,226 (-)	NCBI		Celera
Cytogenetic Map	13	q14.13	NCBI
HuRef	13	26,765,682 - 26,790,829 (-)	NCBI		HuRef
CHM1_1	13	45,934,266 - 45,959,317 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	13	44,612,450 - 44,654,483 (-)	NCBI		T2T-CHM13v2.0

Slc25a30
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	14	75,994,986 - 76,024,477 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	14	75,997,557 - 76,024,477 (-)	Ensembl		GRCm39 Ensembl
GRCm38	14	75,757,534 - 75,787,037 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	14	75,760,117 - 75,787,037 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	14	76,161,806 - 76,186,844 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	14	74,496,154 - 74,521,192 (-)	NCBI		MGSCv36	mm8
Celera	14	73,263,844 - 73,288,538 (-)	NCBI		Celera
Cytogenetic Map	14	D3	NCBI
cM Map	14	40.29	NCBI

Slc25a30
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	15	57,486,346 - 57,508,981 (-)	NCBI		GRCr8
mRatBN7.2	15	51,076,998 - 51,099,613 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	15	51,077,002 - 51,099,613 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	15	55,235,194 - 55,257,774 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	15	56,353,517 - 56,376,096 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	15	53,173,751 - 53,198,616 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	15	57,811,612 - 57,834,173 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	15	57,813,356 - 57,834,173 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	15	61,520,775 - 61,541,280 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	15	56,656,204 - 56,695,237 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	15	56,671,984 - 56,711,017 (-)	NCBI
Celera	15	50,706,833 - 50,726,329 (-)	NCBI		Celera
Cytogenetic Map	15	q11	NCBI

SLC25A30
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	14	45,958,998 - 45,984,100 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	13	37,012,935 - 37,038,217 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	13	27,599,247 - 27,620,917 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3

SLC25A30
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	22	5,636,039 - 5,664,027 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	22	5,638,583 - 5,658,025 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	22	5,625,215 - 5,650,141 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	22	5,753,817 - 5,778,738 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	22	5,753,819 - 5,781,718 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	22	5,535,918 - 5,560,836 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	22	5,599,116 - 5,623,991 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	22	5,604,521 - 5,629,456 (-)	NCBI		UU_Cfam_GSD_1.0

Slc25a30
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404945	155,620,200 - 155,640,319 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936857	42,546 - 62,607 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936857	42,509 - 61,764 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

SLC25A30
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	3	23,456,446 - 23,528,246 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	3	23,503,005 - 23,525,625 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666057	20,531,975 - 20,557,564 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Slc25a30
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624748	9,567,769 - 9,583,023 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624748	9,564,872 - 9,589,266 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_005409085	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AGCD01067795	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	GBCQ01178160	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSCLAT00000000435 ⟹ ENSCLAP00000000406

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0 Ensembl	NW_004955518	3,181,368 - 3,203,061 (+)	Ensembl

RefSeq Acc Id:

XM_005409085 ⟹ XP_005409142

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0	NW_004955518	3,182,085 - 3,203,061 (+)	NCBI

Sequence:

show sequence

ACTGCGACACGGGGCCTGGGCCGCCCCCGCTGCCGGGCAGCCTTTTCTTCGCCGAGCGGCGTTG
CTGTTCATCCCGGCTGGTCCAGGGCGGGGAAAGGCGGAGGGCCTCCGTCGCAGGAGAAAACTGC
TGGAGACGATGCTTGTATGATTCTAAGGAACAGTGACAGAATGTCAGCTCTCAACTGGAAGCCC
TTTGTCTATGGAGGGCTGGCCTCCATCACAGCTGAATGTGGCACCTTTCCAATCGATTTAACCA
AGACACGGCTCCAGATACAAGGCCAGAGGAATGATGCAAACTTTAGAGAAATCAAGTATCGAGG
AATGTTGCACGCTTTAGTAAGGATAGGCAGAGAAGAAGGGCTGAAGGCATTGTATTCAGGGATT
GCCCCTGCAATGCTGCGCCAGGCTTCCTATGGCACCATCAAGATCGGCACTTACCAGAGCTTGA
AGCGATTGTTTGTTGAGCGCCCTGAAGATGAAACCCTACTGATCAATGTCATATGTGGGATTCT
CTCTGGAGTCATATCCTCAGCCATTGCTAATCCAACTGATGTTTTGAAAATACGAATGCAAGCA
CAAAATAGCACCATTCAAGGAGGAATGATAGGCAACTTCATTAACATTTACCAGCAGGAAGGGA
CAAGAGGACTCTGGAAGGGTGTGTCCCTTACAGCTCAGAGAGCTGCCATTGTTGTTGGTGTGGA
ACTGCCGGTCTATGACATCACCAAGAAGCATCTGATTCTCTCAGGCCTGATGGGGGACACTGTA
TATACCCACTTCCTCTCAAGCTTTACCTGTGGTCTAGTGGGGGCCCTGGCCTCAAACCCTGTCG
ATGTTGTGAGAACCCGTATGATGAATCAGAGAGTCCTTCGAGATGGCAAATGCTCTGGCTACAC
AGGTACCCTGGATTGCTTGTTACAGACATGGAAGAATGAAGGTTTTTTTGCTCTCTATAAAGGA
TTTTGGCCAAATTGGTTGAGGCTTGGTCCTTGGAATATCATCTTTTTTGTGACATATGAACAGC
TGAAGAGATTGGACTTGTGACAAGTCCAAGGGACACCCCTCTGAAAATGCTAACTTCTGCAACA
GTAGAGCTTTTGGCATTTCTCTGCTTCTCACTGCTCAGTTCATCACAGATTCTGGGATGGGAGC
AACAGGTGAAGATTGGGGTTAGTTCAGATTGCTGTGTGTTGGCATCAGATGCCTTTCATCAGCG
TTTAATGGCCTAAACTGTAACATCCCAACACTAGTCGCTGCCATTGAAGTGCCCTTCGACATCC
AAGATAATACATGAAATGCATGTTTCTTATTAAAGAAAATCAGAAATGTATACCA

hide sequence

Protein Sequences


Protein RefSeqs	XP_005409142	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSCLAP00000000406
	ENSCLAP00000000406.1

RefSeq Acc Id:

XP_005409142 ⟸ XM_005409085

- UniProtKB:

A0A8C2YI56 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MILRNSDRMSALNWKPFVYGGLASITAECGTFPIDLTKTRLQIQGQRNDANFREIKYRGMLHAL
VRIGREEGLKALYSGIAPAMLRQASYGTIKIGTYQSLKRLFVERPEDETLLINVICGILSGVIS
SAIANPTDVLKIRMQAQNSTIQGGMIGNFINIYQQEGTRGLWKGVSLTAQRAAIVVGVELPVYD
ITKKHLILSGLMGDTVYTHFLSSFTCGLVGALASNPVDVVRTRMMNQRVLRDGKCSGYTGTLDC
LLQTWKNEGFFALYKGFWPNWLRLGPWNIIFFVTYEQLKRLDL

hide sequence

RefSeq Acc Id:

ENSCLAP00000000406 ⟸ ENSCLAT00000000435

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSCLAG00000000339	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSCLAT00000000435	ENTREZGENE
	ENSCLAT00000000435.1	UniProtKB/TrEMBL
Gene3D-CATH	1.50.40.10	UniProtKB/TrEMBL
InterPro	Mit_carrier	UniProtKB/TrEMBL
	Mitochondrial_sb/sol_carrier	UniProtKB/TrEMBL
	Mt_carrier_dom_sf	UniProtKB/TrEMBL
NCBI Gene	Slc25a30	ENTREZGENE
PANTHER	KIDNEY MITOCHONDRIAL CARRIER PROTEIN 1	UniProtKB/TrEMBL
	MITOCHONDRIAL DICARBOXYLATE CARRIER-RELATED	UniProtKB/TrEMBL
Pfam	Mito_carr	UniProtKB/TrEMBL
PRINTS	MTUNCOUPLING	UniProtKB/TrEMBL
PROSITE	SOLCAR	UniProtKB/TrEMBL
Superfamily-SCOP	SSF103506	UniProtKB/TrEMBL
UniProt	A0A8C2YI56	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2016-08-16	Slc25a30	solute carrier family 25 member 30		solute carrier family 25, member 30	Symbol and/or name change	5135510	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

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Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD