Ypel2 (yippee like 2) - Rat Genome Database

Name: Ypel2
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

Gene: Ypel2 (yippee like 2) Chinchilla lanigera

Analyze

Symbol:

Ypel2

Name:

yippee like 2

RGD ID:

9051385

Description:

ASSOCIATED WITH genetic disease (ortholog); Joubert syndrome 1 (ortholog)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

yippee-like 2

RGD Orthologs

Alliance Genes

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	YPEL2 (yippee like 2)	NCBI	Ortholog
Mus musculus (house mouse):	Ypel2 (yippee like 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus norvegicus (Norway rat):	Ypel2 (yippee-like 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	YPEL2 (yippee like 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	YPEL2 (yippee like 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Ypel2 (yippee like 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	YPEL2 (yippee like 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	YPEL2 (yippee like 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Ypel2 (yippee like 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline

Latest Assembly:

ChiLan1.0 - Chinchilla ChiLan1.0 Assembly

Position:

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955451	3,641,887 - 3,704,658 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955451	3,644,951 - 3,698,658 (-)	NCBI	ChiLan1.0	ChiLan1.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

genetic disease (ISO)

Joubert syndrome 1 (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Molecular Function

protein binding (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Transitive Annotation Pipeline	Automated assignment of GO, PW and RDO ISO annotations across species

Genomics

Comparative Map Data

Ypel2
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955451	3,641,887 - 3,704,658 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955451	3,644,951 - 3,698,658 (-)	NCBI	ChiLan1.0	ChiLan1.0

YPEL2
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	17	59,331,655 - 59,401,729 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	17	59,331,655 - 59,401,729 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	17	57,409,016 - 57,479,090 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	17	54,763,835 - 54,833,877 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	17	53,871,908 - 53,941,133 (+)	NCBI		Celera
Cytogenetic Map	17	q22	NCBI
HuRef	17	52,768,378 - 52,838,196 (+)	NCBI		HuRef
CHM1_1	17	57,474,446 - 57,544,454 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	17	60,199,794 - 60,269,870 (+)	NCBI		T2T-CHM13v2.0

Ypel2
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	11	86,827,251 - 86,884,629 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	11	86,827,251 - 86,884,533 (-)	Ensembl		GRCm39 Ensembl
GRCm38	11	86,936,425 - 86,993,805 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	11	86,936,425 - 86,993,707 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	11	86,749,927 - 86,807,264 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	11	86,756,775 - 86,788,204 (-)	NCBI		MGSCv36	mm8
Celera	11	96,537,509 - 96,595,109 (-)	NCBI		Celera
Cytogenetic Map	11	C	NCBI
cM Map	11	51.82	NCBI

Ypel2
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	10	72,243,591 - 72,301,124 (-)	NCBI		GRCr8
mRatBN7.2	10	71,746,308 - 71,803,843 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	10	71,746,311 - 71,803,911 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	10	76,356,800 - 76,414,359 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	10	75,861,684 - 75,919,248 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	10	71,326,222 - 71,383,781 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	10	74,241,032 - 74,298,691 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	10	74,243,812 - 74,298,599 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	10	75,804,187 - 75,861,077 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	10	75,209,773 - 75,263,943 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	10	75,225,122 - 75,278,313 (-)	NCBI
Celera	10	70,665,388 - 70,719,806 (-)	NCBI		Celera
Cytogenetic Map	10	q26	NCBI

YPEL2
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	19	75,496,773 - 75,566,570 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	17	80,308,027 - 80,377,948 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	17	53,400,950 - 53,470,434 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	17	58,246,304 - 58,316,099 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	17	58,246,304 - 58,316,099 (+)	Ensembl	panpan1.1		panPan2

YPEL2
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	9	33,872,730 - 33,935,877 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	9	33,872,797 - 33,931,236 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	9	33,105,666 - 33,168,843 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	9	34,677,620 - 34,744,956 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	9	34,677,646 - 34,743,895 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	9	33,465,822 - 33,528,958 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	9	33,752,270 - 33,815,185 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	9	33,839,051 - 33,902,169 (+)	NCBI		UU_Cfam_GSD_1.0

Ypel2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405602	33,114,068 - 33,175,192 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936490	3,899,866 - 3,939,311 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936490	3,899,488 - 3,961,234 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

YPEL2
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	12	35,573,495 - 35,644,199 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	12	35,573,148 - 35,644,204 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	12	36,808,780 - 36,883,481 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

YPEL2
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	16	34,042,597 - 34,106,735 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	16	34,042,551 - 34,086,816 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666077	4,838,161 - 4,902,963 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Ypel2
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624871	1,197,319 - 1,258,373 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624871	1,197,276 - 1,261,404 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_005393987	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AGCD01043066	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AGCD01043067	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	GBCE01085790	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSCLAT00000025130 ⟹ ENSCLAP00000024889

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0 Ensembl	NW_004955451	3,641,887 - 3,704,658 (-)	Ensembl

RefSeq Acc Id:

ENSCLAT00000025131 ⟹ ENSCLAP00000024890

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0 Ensembl	NW_004955451	3,641,887 - 3,698,466 (-)	Ensembl

RefSeq Acc Id:

XM_005393987 ⟹ XP_005394044

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0	NW_004955451	3,644,951 - 3,698,658 (-)	NCBI

Sequence:

show sequence

TTTGGTTCTTTAGGCCGCCTGCGTTTCTGCCGCCCAGATGGAGCAGCCCTGCTCCTGTCTCTCT
CTGTCTCGAGAGAGATAGGACGGTCGGCCCTGACCCTCGCCTTTGAGATGTGACGTGACCAGCG
GTCTTGACAGTATGATGTGTCCAGACTTGATGGCAGTGATCAGAAACTAGATTGCCAGCTCTGG
ATGAAGCTGCTGAGAACCAGCCCGAGACCTCTGCTTGAGGGTCCTTGCTCTGAAGACGTTACCA
GTGTGTGGAGCCTGCCCCACACCACCCCCTGCCAAACCACGGCCTTTACCTGTGTCTTCCGGTG
TTTCCCGTGCGACCCGTCCTGTGGGAGGGCCTCGTGGGCGGCCCCAGAGTTCTCTCCACGATCA
GCGGCGCCAATGGTGAAGATGACAAGATCCAAGACTTTCCAGGCATATCTGCCCTCCTGCCACC
GGACCTACAGCTGCATTCACTGCAGGGCTCACCTGGCCAATCACGATGAACTAATTTCCAAGTC
GTTCCAAGGAAGTCAAGGACGAGCATATCTCTTCAATTCAGTAGTTAATGTGGGCTGTGGACCT
GCAGAAGAGCGAGTATTGCTAACAGGACTACATGCAGTTGCAGACATTTACTGCGAAAACTGCA
AAACCACTCTGGGGTGGAAATATGAACATGCTTTTGAAAGCAGCCAGAAATATAAAGAAGGCAA
GTACATCATTGAACTAGCACACATGATCAAGGACAATGGCTGGGACTGAGCGGACAGCAGCCAC
CCAACCCAGTGTCCACGTGAACGCCATCCACCCGAACACCCTACCCCGTGTGAGAGAGTGACTG
AACACTTGGTTCCATCCATTTGGGGGCCTTGCCATCTGGGGCGTCCTCCCACCCCAACACCATC
TTTCTGGTGACCGGCCTCTAAATCGCTGTCTCTCTGTCTCTTTGCTTTGTATCTGTTTGTGAGT
TGATCCTGGCTTCTCTCTCTGTTCTAGTTTTTGCTGAAAACAAAACAACTGAAGGAACAGATCC
TTGACCGCACGGCAGCAGCCCACCTTGCTAAGGGTCCCAGGGCCCTGCGAGAGCTGCCCGGCGG
CCTCTTGTCAGGAGAGCAGTGGCACGTGGGTGTAAGGAAGAGGGAAAAGGGGAGCCCTGAGGTC
CTGGGGGTGGGCAGGGGGCGGAGGGTGGAGGTAGGGCAGAACTGCACCGCTCCTGGAAACCTGG
TAACAGGCTTGAAGTATTCGACTTGTCTAAATGGACAAAGAGAAAAAATAATACCTCATGATTG
CATTCTCTCTGATCGGAAGCCTCTCTTCCTGACACCAAAAGTGCCAGGATAGCAGATGAGCACA
GAGGGGCCCTAATTCTAGCTGACAGGGCAAAGGGCCTGGTTCTCTCCGGCTGAGCTGGGGAGAG
TCCGGGTAGCAGGGAGTGAGGTGGGTGCAGCCCAGATGGGTTTTGATGACTCTGATGCTTCACA
CAGCCTCTGGGTAATCATCGCCTTTGCATCCTCGGCCCCTGAAGGCAAGTGCGGAGGGGACTGT
CGTTTGCAATGGGTGTGAGATGGAACTATCCCGAAGGCTTTGACAGTCAACCACGGAAAATGAG
AAACTGAGGAGAGCAGGGCGTAAGGGGGTGTTGCAGCTTGGGAGCTCCTGAAGAATGGCTCACA
TGTTGAGCCAGAGAAACAAAACATGGAGCCAGTTAGTAATTCTGACTGCTTTTCTTTTCCTGAC
CCTCAATAAGAGTGCTACGGCGGGGGAGGGGTTGGGAGGGACCATGGGAGGAGTGATCAGATGA
GTGCATATTTCCTCTTTGTTTATCAGTGGGATCAGCAATCCTTTGTGTGCAGTGTTTCAGCTGT
CTAGTCCAGTTCCATCATTGTCGACCATGGGAAACACAGACCTAAGGCTTTGAGCCTGGTGATC
ACCTGGTTGGTGGATTCCTCCTGCCCCTCGTTGTTCTTTTTGGATCTGACTGTCTTGTGTGGCA
GAGATCTATTAATGTGGTCCAGCAGTGGGGAGGGCTTACAGATTCCTATATTATCCTCTGCCCC
TACCCTCCCATCCAAGCTTCATTGTGTTAGGGAAGTGGAGAACAAATCCTGTAAGACTTGAGAG
AAGGAAGAGTTTGTTACATTTGATCCACACTGTGAAGTCCTTTCAGTGGCAGTCCAGCCAGTGT
ACGGTGCATGACCGCAACTCGTTTCACTGAGTTAATTTCATTTCATAGACCGAGAACATTATTA
AGATACGTGTGTATTAGGTAATTCTTAGCATCTCATTCTGCAAGTAGGCTGATCCTATAGGAAA
ATGCAGCTTTAAAGGTCTCAAAAAAAAAAAAAAAAAAAAGACAAAGTCCA

hide sequence

Protein Sequences


Protein RefSeqs	XP_005394044	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSCLAP00000024889.1
	ENSCLAP00000024890
	ENSCLAP00000024890.1

RefSeq Acc Id:	XP_005394044 ⟸ XM_005393987
- UniProtKB:	A0A8C2W6S8 (UniProtKB/TrEMBL)
- Sequence:	show sequence MKLLRTSPRPLLEGPCSEDVTSVWSLPHTTPCQTTAFTCVFRCFPCDPSCGRASWAAPEFSPRS AAPMVKMTRSKTFQAYLPSCHRTYSCIHCRAHLANHDELISKSFQGSQGRAYLFNSVVNVGCGP AEERVLLTGLHAVADIYCENCKTTLGWKYEHAFESSQKYKEGKYIIELAHMIKDNGWD hide sequence

RefSeq Acc Id:

ENSCLAP00000024890 ⟸ ENSCLAT00000025131

RefSeq Acc Id:

ENSCLAP00000024889 ⟸ ENSCLAT00000025130

Protein Domains

Yippee

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSCLAG00000017085	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSCLAT00000025130.1	UniProtKB/TrEMBL
	ENSCLAT00000025131	ENTREZGENE
	ENSCLAT00000025131.1	UniProtKB/TrEMBL
InterPro	Yippee	UniProtKB/TrEMBL
	Yippee/Mis18/Cereblon	UniProtKB/TrEMBL
	Yippee_fam	UniProtKB/TrEMBL
NCBI Gene	Ypel2	ENTREZGENE
PANTHER	PROTEIN YIPPEE-LIKE 2	UniProtKB/TrEMBL
	PTHR13848	UniProtKB/TrEMBL
Pfam	Yippee-Mis18	UniProtKB/TrEMBL
PROSITE	YIPPEE	UniProtKB/TrEMBL
UniProt	A0A8C2W6S8	ENTREZGENE, UniProtKB/TrEMBL
	A0A8C2WB52_CHILA	UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2016-08-16	Ypel2	yippee like 2		yippee-like 2	Symbol and/or name change	5135510	APPROVED
2015-08-25	Ypel2	yippee-like 2		yippee-like 2 (Drosophila)	Symbol and/or name change	5135510	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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