Pkd2l1 (polycystin 2 like 1, transient receptor potential cation channel) - Rat Genome Database

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Gene: Pkd2l1 (polycystin 2 like 1, transient receptor potential cation channel) Chinchilla lanigera
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Symbol: Pkd2l1
Name: polycystin 2 like 1, transient receptor potential cation channel
RGD ID: 9049353
Description: ENCODES a protein that exhibits alpha-actinin binding (ortholog); calcium activated cation channel activity (ortholog); calcium channel activity (ortholog); INVOLVED IN cation transport (ortholog); cellular response to acidic pH (ortholog); cellular response to pH (ortholog); ASSOCIATED WITH prostate cancer (ortholog); FOUND IN calcium channel complex (ortholog); cation channel complex (ortholog); cell surface (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Also known as: polycystic kidney disease 2-like 1
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555076,146,825 - 6,166,976 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049555076,145,981 - 6,167,152 (-)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

References


Genomics

Comparative Map Data
Pkd2l1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555076,146,825 - 6,166,976 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049555076,145,981 - 6,167,152 (-)NCBIChiLan1.0ChiLan1.0
PKD2L1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl10100,288,149 - 100,330,264 (-)EnsemblGRCh38hg38GRCh38
GRCh3810100,288,145 - 100,347,030 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh3710102,047,906 - 102,089,985 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 3610102,037,893 - 102,080,233 (-)NCBINCBI36hg18NCBI36
Build 3410102,037,892 - 102,080,233NCBI
Celera1095,785,781 - 95,828,122 (-)NCBI
Cytogenetic Map10q24.31NCBI
HuRef1095,676,807 - 95,719,121 (-)NCBIHuRef
CHM1_110102,332,503 - 102,374,685 (-)NCBICHM1_1
Pkd2l1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391944,136,076 - 44,235,355 (-)NCBIGRCm39mm39
GRCm39 Ensembl1944,136,076 - 44,180,881 (-)Ensembl
GRCm381944,147,637 - 44,248,328 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1944,147,637 - 44,192,442 (-)EnsemblGRCm38mm10GRCm38
MGSCv371944,222,127 - 44,266,932 (-)NCBIGRCm37mm9NCBIm37
MGSCv361944,200,948 - 44,245,719 (-)NCBImm8
Celera1944,933,088 - 44,971,513 (-)NCBICelera
Cytogenetic Map19C3NCBI
cM Map1936.91NCBI
Pkd2l1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21243,032,853 - 243,070,031 (-)NCBI
Rnor_6.0 Ensembl1263,922,201 - 263,959,318 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.01263,922,201 - 263,959,318 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01271,367,373 - 271,404,490 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41249,047,374 - 249,084,997 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11249,083,071 - 249,342,077 (+)NCBI
Celera1238,850,066 - 238,887,164 (-)NCBICelera
Cytogenetic Map1q54NCBI
PKD2L1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.110100,370,083 - 100,412,366 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl10100,370,083 - 100,412,366 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01096,889,228 - 96,932,177 (-)NCBIMhudiblu_PPA_v0panPan3
PKD2L1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12813,045,749 - 13,076,072 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2813,045,829 - 13,076,485 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2813,228,826 - 13,259,097 (-)NCBI
ROS_Cfam_1.02813,514,442 - 13,544,711 (-)NCBI
UMICH_Zoey_3.12813,061,160 - 13,091,425 (-)NCBI
UNSW_CanFamBas_1.02813,099,244 - 13,129,512 (-)NCBI
UU_Cfam_GSD_1.02813,233,508 - 13,263,795 (-)NCBI
Pkd2l1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440721333,959,016 - 33,960,778 (+)NCBI
SpeTri2.0NW_004944487205 - 1,593 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PKD2L1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl14111,399,413 - 111,434,642 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.114111,398,704 - 111,434,584 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.214120,901,637 - 120,937,562 (-)NCBISscrofa10.2Sscrofa10.2susScr3
PKD2L1
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1993,319,408 - 93,363,389 (-)NCBI
Vero_WHO_p1.0NW_02366604854,321,567 - 54,368,696 (-)NCBI
Pkd2l1
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462473712,097,134 - 12,137,574 (-)NCBI


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSCLAT00000018986   ⟹   ENSCLAP00000018801
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049555076,146,825 - 6,166,976 (-)Ensembl
RefSeq Acc Id: XM_005407691   ⟹   XP_005407748
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049555076,147,512 - 6,167,152 (-)NCBI
Sequence:
RefSeq Acc Id: XM_005407692   ⟹   XP_005407749
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049555076,145,981 - 6,167,152 (-)NCBI
Sequence:
RefSeq Acc Id: XM_005407693   ⟹   XP_005407750
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049555076,145,981 - 6,167,152 (-)NCBI
Sequence:
RefSeq Acc Id: XM_005407694   ⟹   XP_005407751
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049555076,147,512 - 6,167,152 (-)NCBI
Sequence:
RefSeq Acc Id: XM_005407695   ⟹   XP_005407752
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049555076,147,835 - 6,167,152 (-)NCBI
Sequence:
RefSeq Acc Id: XM_005407696   ⟹   XP_005407753
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049555076,147,512 - 6,167,152 (-)NCBI
Sequence:
Reference Sequences
RefSeq Acc Id: XP_005407750   ⟸   XM_005407693
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_005407749   ⟸   XM_005407692
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_005407753   ⟸   XM_005407696
- Peptide Label: isoform X6
- Sequence:
RefSeq Acc Id: XP_005407751   ⟸   XM_005407694
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: XP_005407748   ⟸   XM_005407691
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_005407752   ⟸   XM_005407695
- Peptide Label: isoform X5
- Sequence:
RefSeq Acc Id: ENSCLAP00000018801   ⟸   ENSCLAT00000018986


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000012878 Ensembl, ENTREZGENE
Ensembl Protein ENSCLAP00000018801 ENTREZGENE
Ensembl Transcript ENSCLAT00000018986 ENTREZGENE
NCBI Gene Pkd2l1 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-08-03 Pkd2l1  polycystin 2 like 1, transient receptor potential cation channel    polycystic kidney disease 2-like 1  Symbol and/or name change 5135510 APPROVED